Medizinische Universität Graz - Research portal
Egger Jan |
** = Publications listed in SCI/SSCI/Pubmed
2025
Short report/Letter
** Puladi, B; Gsaxner, C; Kleesiek, J; Hölzle, F; Röhrig, R; Egger, J
Response to the comment on "The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review".
Int J Oral Maxillofac Surg. 2024;
Doi: 10.1016/j.ijom.2023.12.010
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2024
Full paper/article (Journal)
** Li, J; Zhou, Z; Yang, J; Pepe, A; Gsaxner, C; Luijten, G; Qu, C; Zhang, T; Chen, X; Li, W; Wodzinski, M; Friedrich, P; Xie, K; Jin, Y; Ambigapathy, N; Nasca, E; Solak, N; Melito, GM; Vu, VD; Memon, AR; Schlachta, C; De, Ribaupierre, S; Patel, R; Eagleson, R; Chen, X; Mächler, H; Kirschke, JS; de, la, Rosa, E; Christ, PF; Li, HB; Ellis, DG; Aizenberg, MR; Gatidis, S; Küstner, T; Shusharina, N; Heller, N; Andrearczyk, V; Depeursinge, A; Hatt, M; Sekuboyina, A; Löffler, MT; Liebl, H; Dorent, R; Vercauteren, T; Shapey, J; Kujawa, A; Cornelissen, S; Langenhuizen, P; Ben-Hamadou, A; Rekik, A; Pujades, S; Boyer, E; Bolelli, F; Grana, C; Lumetti, L; Salehi, H; Ma, J; Zhang, Y; Gharleghi, R; Beier, S; Sowmya, A; Garza-Villarreal, EA; Balducci, T; Angeles-Valdez, D; Souza, R; Rittner, L; Frayne, R; Ji, Y; Ferrari, V; Chatterjee, S; Dubost, F; Schreiber, S; Mattern, H; Speck, O; Haehn, D; John, C; Nürnberger, A; Pedrosa, J; Ferreira, C; Aresta, G; Cunha, A; Campilho, A; Suter, Y; Garcia, J; Lalande, A; Vandenbossche, V; Van, Oevelen, A; Duquesne, K; Mekhzoum, H; Vandemeulebroucke, J; Audenaert, E; Krebs, C; van, Leeuwen, T; Vereecke, E; Heidemeyer, H; Röhrig, R; Hölzle, F; Badeli, V; Krieger, K; Gunzer, M; Chen, J; van, Meegdenburg, T; Dada, A; Balzer, M; Fragemann, J; Jonske, F; Rempe, M; Malorodov, S; Bahnsen, FH; Seibold, C; Jaus, A; Marinov, Z; Jaeger, PF; Stiefelhagen, R; Santos, AS; Lindo, M; Ferreira, A; Alves, V; Kamp, M; Abourayya, A; Nensa, F; Hörst, F; Brehmer, A; Heine, L; Hanusrichter, Y; Weßling, M; Dudda, M; Podleska, LE; Fink, MA; Keyl, J; Tserpes, K; Kim, MS; Elhabian, S; Lamecker, H; Zukić, D; Paniagua, B; Wachinger, C; Urschler, M; Duong, L; Wasserthal, J; Hoyer, PF; Basu, O; Maal, T; Witjes, MJH; Schiele, G; Chang, TC; Ahmadi, SA; Luo, P; Menze, B; Reyes, M; Deserno, TM; Davatzikos, C; Puladi, B; Fua, P; Yuille, AL; Kleesiek, J; Egger, J
MedShapeNet - a large-scale dataset of 3D medical shapes for computer vision.
Biomed Tech (Berl). 2025; 70(1):71-90
Doi: 10.1515/bmt-2024-0396
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Review
** Puladi, B; Gsaxner, C; Kleesiek, J; Hoelzle, F; Roehrig, R; Egger, J
The impact and opportunities of large language models like ChatGPT in oral and maxillofacial surgery: a narrative review
INT J ORAL MAX SURG. 2024; 53(1): 78-88.
Doi: 10.1016/j.ijom.2023.09.005
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2022
Full paper/article (Journal)
** Egger, J; Gsaxner, C; Pepe, A; Pomykala, KL; Jonske, F; Kurz, M; Li, JN; Kleesiek, J
Medical deep learning-A systematic meta-review
COMPUT METH PROG BIO. 2022; 221: 106874
Doi: 10.1016/j.cmpb.2022.106874
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** Radl, L; Jin, Y; Pepe, A; Li, J; Gsaxner, C; Zhao, FH; Egger, J
AVT: Multicenter aortic vessel tree CTA dataset collection with ground truth segmentation masks.
Data Brief. 2022; 40:107801
Doi: 10.1016/j.dib.2022.107801
[OPEN ACCESS]
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2021
Full paper/article (Journal)
** Gsaxner, C; Pepe, A; Li, J; Ibrahimpasic, U; Wallner, J; Schmalstieg, D; Egger, J
Augmented Reality for Head and Neck Carcinoma Imaging: Description and Feasibility of an Instant Calibration, Markerless Approach.
Comput Methods Programs Biomed. 2021; 200(1):105854-105854
Doi: 10.1016/j.cmpb.2020.105854
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** Li, J; Gsaxner, C; Pepe, A; Morais, A; Alves, V; von Campe, G; Wallner, J; Egger, J
Synthetic skull bone defects for automatic patient-specific craniofacial implant design.
Sci Data. 2021; 8(1):36-36
Doi: 10.1038/s41597-021-00806-0
[OPEN ACCESS]
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** Li, J; Krall, M; Trummer, F; Memon, AR; Pepe, A; Gsaxner, C; Jin, Y; Chen, X; Deutschmann, H; Zefferer, U; Schäfer, U; Campe, GV; Egger, J
MUG500+: Database of 500 high-resolution healthy human skulls and 29 craniotomy skulls and implants.
Data Brief. 2021; 39: 107524
Doi: 10.1016/j.dib.2021.107524
[OPEN ACCESS]
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** Li, J; Pimentel, P; Szengel, A; Ehlke, M; Lamecker, H; Zachow, S; Estacio, L; Doenitz, C; Ramm, H; Shi, H; Chen, X; Matzkin, F; Newcombe, V; Ferrante, E; Jin, Y; Ellis, DG; Aizenberg, MR; Kodym, O; Spanel, M; Herout, A; Mainprize, JG; Fishman, Z; Hardisty, MR; Bayat, A; Shit, S; Wang, B; Liu, Z; Eder, M; Pepe, A; Gsaxner, C; Alves, V; Zefferer, U; von, Campe, G; Pistracher, K; Schafer, U; Schmalstieg, D; Menze, BH; Glocker, B; Egger, J
AutoImplant 2020-First MICCAI Challenge on Automatic Cranial Implant Design.
IEEE Trans Med Imaging. 2021; 40(9):2329-2342
Doi: 10.1109/TMI.2021.3077047
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** Li, J; von, Campe, G; Pepe, A; Gsaxner, C; Wang, E; Chen, X; Zefferer, U; Tödtling, M; Krall, M; Deutschmann, H; Schäfer, U; Schmalstieg, D; Egger, J
Automatic skull defect restoration and cranial implant generation for cranioplasty.
MED IMAGE ANAL. 2021; 73: 102171
Doi: 10.1016/j.media.2021.102171
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** Wallner, J; Schwaiger, M; Edmondson, SJ; Mischak, I; Egger, J; Feichtinger, M; Zemann, W; Pau, M
Effects of Pre-Operative Risk Factors on Intensive Care Unit Length of Stay (ICU-LOS) in Major Oral and Maxillofacial Cancer Surgery.
Cancers (Basel). 2021; 13(16):
Doi: 10.3390/cancers13163937
[OPEN ACCESS]
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Review
** Egger, J; Pepe, A; Gsaxner, C; Jin, Y; Li, JN; Kern, R
Deep learning-a first meta-survey of selected reviews across scientific disciplines, their commonalities, challenges and research impact
PEERJ COMPUT SCI. 2021; 7: e773
Doi: 10.7717/peerj-cs.773
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** Lungu, AJ; Swinkels, W; Claesen, L; Tu, P; Egger, J; Chen, X
A review on the applications of virtual reality, augmented reality and mixed reality in surgical simulation: an extension to different kinds of surgery.
Expert Rev Med Devices. 2021; 18(1):47-62
Doi: 10.1080/17434440.2021.1860750
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** Memon, AR; Li, JN; Egger, J; Chen, XJ
A review on patient-specific facial and cranial implant design using Artificial Intelligence (AI) techniques
EXPERT REV MED DEVIC. 2021;
Doi: 10.1080/17434440.2021.1969914
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2020
Review
** Memon, AR; Wang, E; Hu, J; Egger, J; Chen, X
A review on computer-aided design and manufacturing of patient-specific maxillofacial implants.
Expert Rev Med Devices. 2020; 17(4):345-356
Doi: 10.1080/17434440.2020.1736040
[OPEN ACCESS]
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** Pepe, A; Li, J; Rolf-Pissarczyk, M; Gsaxner, C; Chen, X; Holzapfel, GA; Egger, J
Detection, segmentation, simulation and visualization of aortic dissections: A review.
MED IMAGE ANAL. 2020; 65(1): 101773-101773.
Doi: 10.1016/j.media.2020.101773
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2019
Full paper/article (Journal)
** Gsaxner, C; Roth, PM; Wallner, J; Egger, J
Exploit fully automatic low-level segmented PET data for training high-level deep learning algorithms for the corresponding CT data.
PLoS One. 2019; 14(3):e0212550-e0212550
Doi: 10.1371/journal.pone.0212550
[OPEN ACCESS]
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** Gsaxner, C; Wallner, J; Chen, X; Zemann, W; Egger, J
Facial model collection for medical augmented reality in oncologic cranio-maxillofacial surgery.
Sci Data. 2019; 6(1):310-310
Doi: 10.1038/s41597-019-0327-8
[OPEN ACCESS]
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** Lindner, L; Narnhofer, D; Weber, M; Gsaxner, C; Kolodziej, M; Egger, J
Using Synthetic Training Data for Deep Learning-Based GBM Segmentation.
Annu Int Conf IEEE Eng Med Biol Soc. 2019; 2019(4):6724-6729
Doi: 10.1109/EMBC.2019.8856297
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** Pau, M; Wallner, J; Feichtinger, M; Schwaiger, M; Egger, J; Cambiaso-Daniel, J; Winter, R; Jakse, N; Zemann, W
Free thoracodorsal, perforator-scapular flap based on the angular artery (TDAP-Scap-aa): Clinical experiences and description of a novel technique for single flap reconstruction of extensive oromandibular defects.
J Craniomaxillofac Surg. 2019; 47(10):1617-1625
Doi: 10.1016/j.jcms.2019.07.021
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** Pepe, A; Trotta, GF; Mohr-Ziak, P; Gsaxner, C; Wallner, J; Bevilacqua, V; Egger, J
A Marker-Less Registration Approach for Mixed Reality-Aided Maxillofacial Surgery: a Pilot Evaluation.
J Digit Imaging. 2019; 32(6):1008-1018
Doi: 10.1007/s10278-019-00272-6
[OPEN ACCESS]
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** Wallner, J; Schwaiger, M; Hochegger, K; Gsaxner, C; Zemann, W; Egger, J
A review on multiplatform evaluations of semi-automatic open-source based image segmentation for cranio-maxillofacial surgery.
Comput Methods Programs Biomed. 2019; 182(1):105102-105102
Doi: 10.1016/j.cmpb.2019.105102
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** Weber, M; Wild, D; Wallner, J; Egger, J
A Client/Server based Online Environment for the Calculation of Medical Segmentation Scores.
Annu Int Conf IEEE Eng Med Biol Soc. 2019; 2019(4):3463-3467
Doi: 10.1109/EMBC.2019.8856481
[Oral Communication]
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2018
Full paper/article (Journal)
** Bruneder, S; Wallner, J; Weiglein, A; Kmečová, Ĺ; Egger, J; Pilsl, U; Zemann, W
Anatomy of the Le Fort I segment: Are arterial variations a potential risk factor for avascular bone necrosis in Le Fort I osteotomies?
J Craniomaxillofac Surg. 2018; 46(8):1285-1295
Doi: 10.1016/j.jcms.2018.04.023
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** Egger, J; Pfarrkirchner, B; Gsaxner, C; Lindner, L; Schmalstieg, D; Wallner, J
Fully Convolutional Mandible Segmentation on a valid Ground- Truth Dataset.
Annu Int Conf IEEE Eng Med Biol Soc. 2018; 2018(3):656-660
Doi: 10.1109/EMBC.2018.8512458
[Oral Communication]
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** Hann, A; Nosalski, E; Hermann, PC; Egger, J; Seufferlein, T; Keller, F
Chemotherapeutic agents eligible for prior dosing in pancreatic cancer patients requiring hemodialysis: a systematic review
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Clin Nephrol. 2018; 90(2):125-141
Doi: 10.5414/CN109327
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** Wallner, J; Hochegger, K; Chen, X; Mischak, I; Reinbacher, K; Pau, M; Zrnc, T; Schwenzer-Zimmerer, K; Zemann, W; Schmalstieg, D; Egger, J
Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action.
PLoS One. 2018; 13(5):e0196378-e0196378
Doi: 10.1371/journal.pone.0196378
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2017
Full paper/article (Journal)
** Chen, X; Xu, L; Li, X; Egger, J
Computer-aided implant design for the restoration of cranial defects.
Sci Rep. 2017; 7(1): 4199-4199.
Doi: 10.1038/s41598-017-04454-6
[OPEN ACCESS]
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** Egger, J; Gall, M; Tax, A; Ücal, M; Zefferer, U; Li, X; von Campe, G; Schäfer, U; Schmalstieg, D; Chen, X
Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software.
PLoS One. 2017; 12(3):e0172694-e0172694
Doi: 10.1371/journal.pone.0172694
[OPEN ACCESS]
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** Egger, J; Gall, M; Wallner, J; Boechat, P; Hann, A; Li, X; Chen, X; Schmalstieg, D
HTC Vive MeVisLab integration via OpenVR for medical applications.
PLoS One. 2017; 12(3):e0173972-e0173972
Doi: 10.1371/journal.pone.0173972
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** Egger, J; Nimsky, C; Chen, X
Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application.
SAGE Open Med. 2017; 5(11):2050312117740984-2050312117740984
Doi: 10.1177/2050312117740984
[OPEN ACCESS]
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** Egger, J; Schmalstieg, D; Chen, X; Zoller, WG; Hann, A
Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images.
Sci Rep. 2017; 7(1): 892-892.
Doi: 10.1038/s41598-017-00940-z
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** Egger, J; Wallner, J; Gall, M; Chen, X; Schwenzer-Zimmerer, K; Reinbacher, K; Schmalstieg, D
Computer-aided position planning of miniplates to treat facial bone defects.
PLoS One. 2017; 12(8):e0182839-e0182839
Doi: 10.1371/journal.pone.0182839
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** Hann, A; Bettac, L; Haenle, MM; Graeter, T; Berger, AW; Dreyhaupt, J; Schmalstieg, D; Zoller, WG; Egger, J
Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound.
Sci Rep. 2017; 7(1): 12779-12779.
Doi: 10.1038/s41598-017-12925-z
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** Hann, A; Bohle, W; Egger, J; Zoller, W
Feasibility of alternating induction and maintenance chemotherapy in pancreatic cancer.
Sci Rep. 2017; 7(3): 41549-41549.
Doi: 10.1038/srep41549
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2016
Full paper/article (Journal)
** Chen, X; Li, X; Xu, L; Sun, Y; Politis, C; Egger, J
Development of a computer-aided design software for dental splint in orthognathic surgery.
Sci Rep. 2016; 6(3): 38867-38867.
Doi: 10.1038/srep38867
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** Chen, X; Xu, L; Yang, Y; Egger, J
A semi-automatic computer-aided method for surgical template design.
Sci Rep. 2016; 6(2): 20280-20280.
Doi: 10.1038/srep20280
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** Gall, M; Xing Li, M; Xiaojun Chen, M; Schmalstieg, D; Egger, J
Computer-aided planning and reconstruction of cranial 3D implants.
Annu Int Conf IEEE Eng Med Biol Soc. 2016; 2016(3):1179-1183
Doi: 10.1109/EMBC.2016.7590915
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** Lüddemann, T; Egger, J
Iterative-cuts: longitudinal and scale-invariant segmentation via user-defined templates for rectosigmoid colon in gynecological brachytherapy.
J Med Imaging (Bellingham). 2016; 3(2): 024004-024004.
Doi: 10.1117/1.JMI.3.2.024004
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2015
Full paper/article (Journal)
** Chen, X; Xu, L; Wang, Y; Wang, H; Wang, F; Zeng, X; Wang, Q; Egger, J
Development of a surgical navigation system based on augmented reality using an optical see-through head-mounted display.
J Biomed Inform. 2015; 55(2): 124-131.
Doi: 10.1016/j.jbi.2015.04.003
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** Egger, J; Busse, H; Brandmaier, P; Seider, D; Gawlitza, M; Strocka, S; Voglreiter, P; Dokter, M; Hofmann, M; Kainz, B; Chen, X; Hann, A; Boechat, P; Yu, W; Freisleben, B; Alhonnoro, T; Pollari, M; Moche, M; Schmalstieg, D
RFA-cut: Semi-automatic segmentation of radiofrequency ablation zones with and without needles via optimal s-t-cuts.
Annu Int Conf IEEE Eng Med Biol Soc. 2015; 2015(2):2423-2429
Doi: 10.1109/EMBC.2015.7318883
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** Egger, J; Busse, H; Brandmaier, P; Seider, D; Gawlitza, M; Strocka, S; Voglreiter, P; Dokter, M; Hofmann, M; Kainz, B; Hann, A; Chen, X; Alhonnoro, T; Pollari, M; Schmalstieg, D; Moche, M
Interactive Volumetry Of Liver Ablation Zones.
Sci Rep. 2015; 5(2): 15373-15373.
Doi: 10.1038/srep15373
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2014
Full paper/article (Journal)
** Chen, X; Egger, J
Development of an open source software module for enhanced visualization during MR-guided interstitial gynecologic brachytherapy.
Springerplus. 2014; 3(2): 167-167.
Doi: 10.1186/2193-1801-3-167
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** Egger, J
Refinement-cut: user-guided segmentation algorithm for translational science.
Sci Rep. 2014; 4(2): 5164-5164.
Doi: 10.1038/srep05164
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** Egger, J; Lüddemann, T; Schwarzenberg, R; Freisleben, B; Nimsky, C
Interactive-cut: Real-time feedback segmentation for translational research.
Comput Med Imaging Graph. 2014; 38(4): 285-295.
Doi: 10.1016/j.compmedimag.2014.01.006
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** Schwarzenberg, R; Freisleben, B; Nimsky, C; Egger, J
Cube-cut: vertebral body segmentation in MRI-data through cubic-shaped divergences.
PLoS One. 2014; 9(4): e93389-e93389.
Doi: 10.1371/journal.pone.0093389
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2013
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** Egger, J
PCG-cut: graph driven segmentation of the prostate central gland.
PLoS One. 2013; 8(10):e76645-e76645
Doi: 10.1371/journal.pone.0076645
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** Egger, J
Image-guided therapy system for interstitial gynecologic brachytherapy in a multimodality operating suite.
Springerplus. 2013; 2(1):395-395
Doi: 10.1186/2193-1801-2-395
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** Egger, J; Kapur, T; Fedorov, A; Pieper, S; Miller, JV; Veeraraghavan, H; Freisleben, B; Golby, AJ; Nimsky, C; Kikinis, R
GBM volumetry using the 3D Slicer medical image computing platform.
Sci Rep. 2013; 3(10):1364-1364
Doi: 10.1038/srep01364
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** Egger, J; Zukić, D; Freisleben, B; Kolb, A; Nimsky, C
Segmentation of pituitary adenoma: a graph-based method vs. a balloon inflation method.
Comput Methods Programs Biomed. 2013; 110(3):268-278
Doi: 10.1016/j.cmpb.2012.11.010
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Case Report
** Kuhnt, D; Bauer, MH; Egger, J; Richter, M; Kapur, T; Sommer, J; Merhof, D; Nimsky, C
Fiber tractography based on diffusion tensor imaging compared with high-angular-resolution diffusion imaging with compressed sensing: initial experience.
Neurosurgery. 2013; 72 Suppl 1:165-175
Doi: 10.1227/NEU.0b013e318270d9fb
(- Case Report)
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2012
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** Egger, J; Colen, RR; Freisleben, B; Nimsky, C
Manual refinement system for graph-based segmentation results in the medical domain.
J Med Syst. 2012; 36(5):2829-2839
Doi: 10.1007/s10916-011-9761-7
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** Egger, J; Freisleben, B; Nimsky, C; Kapur, T
Template-cut: a pattern-based segmentation paradigm.
Sci Rep. 2012; 2(9):420-420
Doi: 10.1038/srep00420
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** Egger, J; Grosskopf, S; Nimsky, C; Kapur, T; Freisleben, B
Modeling and visualization techniques for virtual stenting of aneurysms and stenoses.
Comput Med Imaging Graph. 2012; 36(3):183-203
Doi: 10.1016/j.compmedimag.2011.12.002
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** Egger, J; Kappus, C; Freisleben, B; Nimsky, C
A medical software system for volumetric analysis of cerebral pathologies in magnetic resonance imaging (MRI) data.
J Med Syst. 2012; 36(4):2097-2109
Doi: 10.1007/s10916-011-9673-6
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** Egger, J; Kapur, T; Dukatz, T; Kolodziej, M; Zukić, D; Freisleben, B; Nimsky, C
Square-cut: a segmentation algorithm on the basis of a rectangle shape.
PLoS One. 2012; 7(2):e31064-e31064
Doi: 10.1371/journal.pone.0031064
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** Egger, J; Kapur, T; Nimsky, C; Kikinis, R
Pituitary adenoma volumetry with 3D Slicer.
PLoS One. 2012; 7(12):e51788-e51788
Doi: 10.1371/journal.pone.0051788
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** Egger, J; Tokuda, J; Chauvin, L; Freisleben, B; Nimsky, C; Kapur, T; Wells, W
Integration of the OpenIGTLink network protocol for image-guided therapy with the medical platform MeVisLab.
Int J Med Robot. 2012; 8(3):282-290
Doi: 10.1002/rcs.1415
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** Kapur, T; Egger, J; Damato, A; Schmidt, EJ; Viswanathan, AN
3-T MR-guided brachytherapy for gynecologic malignancies.
Magn Reson Imaging. 2012; 30(9):1279-1290
Doi: 10.1016/j.mri.2012.06.003
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** Renapurkar, RD; Setser, RM; O'Donnell, TP; Egger, J; Lieber, ML; Desai, MY; Stillman, AE; Schoenhagen, P; Flamm, SD
Aortic volume as an indicator of disease progression in patients with untreated infrarenal abdominal aneurysm.
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Doi: 10.1016/j.ejrad.2011.01.077
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** Bauer, MH; Barbieri, S; Klein, J; Egger, J; Kuhnt, D; Freisleben, B; Hahn, HK; Nimsky, C
Boundary estimation of fiber bundles derived from diffusion tensor images.
Int J Comput Assist Radiol Surg. 2011; 6(1):1-11
Doi: 10.1007/s11548-010-0423-x
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