Medizinische Universität Graz - Research portal
Dabernig-Heinz Johanna |
** = Publications listed in SCI/SSCI/Pubmed
2025
Full paper/article (Journal)
** Galeone, V; Dabernig-Heinz, J; Lohde, M; Brandt, C; Kohler, C; Wagner, GE; Hölzer, M
Decoding bacterial methylomes in four public health-relevant microbial species: nanopore sequencing enables reproducible analysis of DNA modifications.
BMC Genomics. 2025; 26(1):394
Doi: 10.1186/s12864-025-11592-z
[OPEN ACCESS]
Web of Science
PubMed
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FullText_MUG
** Weigl, S; Dabernig-Heinz, J; Granitz, F; Lipp, M; Ostermann, L; Harmsen, D; Trinh, TT; Steinmetz, I; Wagner, GE; Lichtenegger, S
Improving Nanopore sequencing-based core genome MLST for global infection control: a strategy for GC-rich pathogens like Burkholderia pseudomallei.
J Clin Microbiol. 2025; e0156924
Doi: 10.1128/jcm.01569-24
[OPEN ACCESS]
Web of Science
PubMed
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FullText_MUG
2024
Full paper/article (Journal)
** Dabernig-Heinz, J; Lohde, M; Hölzer, M; Cabal, A; Conzemius, R; Brandt, C; Kohl, M; Halbedel, S; Hyden, P; Fischer, MA; Pietzka, A; Daza, B; Idelevich, EA; Stöger, A; Becker, K; Fuchs, S; Ruppitsch, W; Steinmetz, I; Kohler, C; Wagner, GE
A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens.
J Clin Microbiol. 2024; e0062824
Doi: 10.1128/jcm.00628-24
[OPEN ACCESS]
Web of Science
PubMed
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** Dabernig-Heinz, J; Wagner, GE; Prior, K; Lipp, M; Kienesberger, S; Ruppitsch, W; Rønning, TG; Harmsen, D; Steinmetz, I; Leitner, E
Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic Klebsiella oxytoca species complex.
J Clin Microbiol. 2024; 62(6):e0172523
Doi: 10.1128/jcm.01725-23
[OPEN ACCESS]
Web of Science
PubMed
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** Lohde, M; Wagner, GE; Dabernig-Heinz, J; Viehweger, A; Braun, SD; Monecke, S; Diezel, C; Stein, C; Marquet, M; Ehricht, R; Pletz, MW; Brandt, C
Accurate bacterial outbreak tracing with Oxford Nanopore sequencing and reduction of methylation-induced errors.
Genome Res. 2024;
Doi: 10.1101/gr.278848.123
[OPEN ACCESS]
Web of Science
PubMed
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2023
Full paper/article (Journal)
** Dabernig-Heinz, J; Wagner, GE; Leitner, E; Ruppitsch, W; Steinmetz, I; Högenauer, C; Zechner, EL; Kienesberger, S
Complete Genome Sequence of Klebsiella oxytoca Strain AHC-6, Isolated from a Patient during Acute Antibiotic-Associated Hemorrhagic Colitis.
Microbiol Resour Announc. 2023; 12(4):e0135022
Doi: 10.1128/mra.01350-22
[OPEN ACCESS]
Web of Science
PubMed
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** Mulet, M; Martinez, MJ; Gomila, M; Dabernig-Heinz, J; Wagner, GE; Kittinger, C; Zarfel, G; Lalucat, J; Garcia-Valdes, E
Genome-Based Species Diversity Assessment in the Pseudomonas chlororaphis Phylogenetic Subgroup and Proposal of Pseudomonas danubii sp. nov. Isolated from Freshwaters, Soil, and Rhizosphere
DIVERSITY-BASEL. 2023; 15(5): 617
Doi: 10.3390/d15050617
Web of Science
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** Wagner, GE; Dabernig-Heinz, J; Lipp, M; Cabal, A; Simantzik, J; Kohl, M; Scheiber, M; Lichtenegger, S; Ehricht, R; Leitner, E; Ruppitsch, W; Steinmetz, I
Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance.
J Clin Microbiol. 2023; 61(4):e0163122
Doi: 10.1128/jcm.01631-22
[OPEN ACCESS]
Web of Science
PubMed
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FullText_MUG