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Publikationen

Suchbegriffe: SEQUENCE ANALYSIS, DNA - , . Treffer: 82

2017

Blachowicz, A; Mayer, T; Bashir, M; Pieber, TR; De León, P; Venkateswaran, K Human presence impacts fungal diversity of inflated lunar/Mars analog habitat.
Microbiome. 2017; 5(1):62-62 Doi: 10.1186/s40168-017-0280-8 [OPEN ACCESS]
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Byrgazov, K; Kastner, R; Gorna, M; Hoermann, G; Koenig, M; Lucini, CB; Ulreich, R; Benesch, M; Strenger, V; Lackner, H; Schwinger, W; Sovinz, P; Haas, OA; van den Heuvel-Eibrink, M; Niemeyer, CM; Hantschel, O; Valent, P; Superti-Furga, G; Urban, C; Dworzak, MN; Lion, T NDEL1-PDGFRB fusion gene in a myeloid malignancy with eosinophilia associated with resistance to tyrosine kinase inhibitors.
Leukemia. 2017; 31(1):237-240 Doi: 10.1038/leu.2016.250 [OPEN ACCESS]
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Kashofer, K; Regauer, S Analysis of full coding sequence of the TP53 gene in invasive vulvar cancers: Implications for therapy.
GYNECOL ONCOL. 2017; 146(2): 314-318. Doi: 10.1016/j.ygyno.2017.05.018
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von der Heide, EK; Neumann, M; Vosberg, S; James, AR; Schroeder, MP; Ortiz-Tanchez, J; Isaakidis, K; Schlee, C; Luther, M; Jöhrens, K; Anagnostopoulos, I; Mochmann, LH; Nowak, D; Hofmann, WK; Greif, PA; Baldus, CD Molecular alterations in bone marrow mesenchymal stromal cells derived from acute myeloid leukemia patients.
Leukemia. 2017; 31(5): 1069-1078. Doi: 10.1038/leu.2016.324
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2016

Arora, N; Schuenemann, VJ; Jäger, G; Peltzer, A; Seitz, A; Herbig, A; Strouhal, M; Grillová, L; Sánchez-Busó, L; Kühnert, D; Bos, KI; Davis, LR; Mikalová, L; Bruisten, S; Komericki, P; French, P; Grant, PR; Pando, MA; Vaulet, LG; Fermepin, MR; Martinez, A; Centurion Lara, A; Giacani, L; Norris, SJ; Šmajs, D; Bosshard, PP; González-Candelas, F; Nieselt, K; Krause, J; Bagheri, HC Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster.
Nat Microbiol. 2016; 2(368): 16245-16245. Doi: 10.1038/nmicrobiol.2016.245 [OPEN ACCESS]
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Bashir, M; Prietl, B; Tauschmann, M; Mautner, SI; Kump, PK; Treiber, G; Wurm, P; Gorkiewicz, G; Högenauer, C; Pieber, TR Effects of high doses of vitamin D3 on mucosa-associated gut microbiome vary between regions of the human gastrointestinal tract.
Eur J Nutr. 2016; 55(4):1479-1489 Doi: 10.1007/s00394-015-0966-2 [OPEN ACCESS]
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Biundo, A; Hromic, A; Pavkov-Keller, T; Gruber, K; Quartinello, F; Haernvall, K; Perz, V; Arrell, MS; Zinn, M; Ribitsch, D; Guebitz, GM Characterization of a poly(butylene adipate-co-terephthalate)- hydrolyzing lipase from Pelosinus fermentans.
Appl Microbiol Biotechnol. 2016; 100(4): 1753-1764. Doi: 10.1007/s00253-015-7031-1 [OPEN ACCESS]
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Kawala, MA; Bohndorf, M; Graffmann, N; Wruck, W; Zatloukal, K; Adjaye, J Characterization of dermal fibroblast-derived iPSCs from a patient with low grade steatosis.
Stem Cell Res. 2016; 17(3):547-549 Doi: 10.1016/j.scr.2016.10.004 [OPEN ACCESS]
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Laghmani, K; Beck, BB; Yang, SS; Seaayfan, E; Wenzel, A; Reusch, B; Vitzthum, H; Priem, D; Demaretz, S; Bergmann, K; Duin, LK; Göbel, H; Mache, C; Thiele, H; Bartram, MP; Dombret, C; Altmüller, J; Nürnberg, P; Benzing, T; Levtchenko, E; Seyberth, HW; Klaus, G; Yigit, G; Lin, SH; Timmer, A; de Koning, TJ; Scherjon, SA; Schlingmann, KP; Bertrand, MJ; Rinschen, MM; de Backer, O; Konrad, M; Kömhoff, M Polyhydramnios, Transient Antenatal Bartter's Syndrome, and MAGED2 Mutations.
N Engl J Med. 2016; 374(19): 1853-1863. Doi: 10.1056/NEJMoa1507629 (- Case Report) [OPEN ACCESS]
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Sturmberger, L; Chappell, T; Geier, M; Krainer, F; Day, KJ; Vide, U; Trstenjak, S; Schiefer, A; Richardson, T; Soriaga, L; Darnhofer, B; Birner-Gruenberger, R; Glick, BS; Tolstorukov, I; Cregg, J; Madden, K; Glieder, A Refined Pichia pastoris reference genome sequence.
J Biotechnol. 2016; 235(6):121-131 Doi: 10.1016/j.jbiotec.2016.04.023 [OPEN ACCESS]
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Ulrich, S; Posch, U; Helmberg, W; Schlenke, P HLA-A*68:02:11, a new HLA-A*68 allele identified during family HLA typing.
HLA. 2016; 88(4):197-198 Doi: 10.1111/tan.12875
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Ulz, P; Thallinger, GG; Auer, M; Graf, R; Kashofer, K; Jahn, SW; Abete, L; Pristauz, G; Petru, E; Geigl, JB; Heitzer, E; Speicher, MR Inferring expressed genes by whole-genome sequencing of plasma DNA.
Nat Genet. 2016; 48(10):1273-1278 Doi: 10.1038/ng.3648
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Xue, Y; Schoser, B; Rao, AR; Quadrelli, R; Vaglio, A; Rupp, V; Beichler, C; Nelson, SF; Schapacher-Tilp, G; Windpassinger, C; Wilcox, WR Exome Sequencing Identified a Splice Site Mutation in FHL1 that Causes Uruguay Syndrome, an X-Linked Disorder With Skeletal Muscle Hypertrophy and Premature Cardiac Death.
Circ Cardiovasc Genet. 2016; 9(2):130-135 Doi: 10.1161/CIRCGENETICS.115.001193 [OPEN ACCESS]
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Zollner-Schwetz, I; Leitner, E; Plieschnegger, W; Semlitsch, G; Stepan, V; Reiter, L; Reicht, G; Mörth, E; Pavek, J; Parsché, P; Betterklieber, C; Atzmüller, D; Krause, R; Högenauer, C Primary resistance of Helicobacter pylori is still low in Southern Austria.
Int J Med Microbiol. 2016; 306(4):206-211 Doi: 10.1016/j.ijmm.2016.04.003
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2015

Bedenić, B; Beader, N; Godič-Torkar, K; Vranić-Ladavac, M; Luxner, J; Veir, Z; Grisold, AJ; Zarfel, G Nursing Home as a Reservoir of Carbapenem-Resistant Acinetobacter baumannii.
Microb Drug Resist. 2015; 21(3):270-278 Doi: 10.1089/mdr.2014.0157
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Heitzer, E; Ulz, P; Geigl, JB Circulating tumor DNA as a liquid biopsy for cancer.
Clin Chem. 2015; 61(1):112-123 Doi: 10.1373/clinchem.2014.222679 [OPEN ACCESS]
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Kassner, U; Salewsky, B; Wühle-Demuth, M; Szijarto, IA; Grenkowitz, T; Binner, P; März, W; Steinhagen-Thiessen, E; Demuth, I Severe hypertriglyceridemia in a patient heterozygous for a lipoprotein lipase gene allele with two novel missense variants.
Eur J Hum Genet. 2015; 23(9):1259-1261 Doi: 10.1038/ejhg.2014.295 (- Case Report) [OPEN ACCESS]
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Rafiq, MA; Leblond, CS; Saqib, MA; Vincent, AK; Ambalavanan, A; Khan, FS; Ayaz, M; Shaheen, N; Spiegelman, D; Ali, G; Amin-ud-Din, M; Laurent, S; Mahmood, H; Christian, M; Ali, N; Fennell, A; Nanjiani, Z; Egger, G; Caron, C; Waqas, A; Ayub, M; Rasheed, S; Forgeot d'Arc, B; Johnson, A; So, J; Brohi, MQ; Mottron, L; Ansar, M; Vincent, JB; Xiong, L Novel VPS13B Mutations in Three Large Pakistani Cohen Syndrome Families Suggests a Baloch Variant with Autistic-Like Features.
BMC Med Genet. 2015; 16(7):41-41 Doi: 10.1186/s12881-015-0183-0 (- Case Report) [OPEN ACCESS]
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Schaller, S; Weinberger, J; Jimenez-Heredia, R; Danzer, M; Oberbauer, R; Gabriel, C; Winkler, SM ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data.
BMC Bioinformatics. 2015; 16(9):252-252 Doi: 10.1186/s12859-015-0687-9 [OPEN ACCESS]
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UK10K Consortium; Walter, K; Min, JL; Huang, J; Crooks, L; Memari, Y; McCarthy, S; Perry, JR; Xu, C; Futema, M; Lawson, D; Iotchkova, V; Schiffels, S; Hendricks, AE; Danecek, P; Li, R; Floyd, J; Wain, LV; Barroso, I; Humphries, SE; Hurles, ME; Zeggini, E; Barrett, JC; Plagnol, V; Richards, JB; Greenwood, CM; Timpson, NJ; Durbin, R; Soranzo, N The UK10K project identifies rare variants in health and disease.
Nature. 2015; 526(7571):82-90 Doi: 10.1038/nature14962 [OPEN ACCESS]
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Zuckermann, M; Hovestadt, V; Knobbe-Thomsen, CB; Zapatka, M; Northcott, PA; Schramm, K; Belic, J; Jones, DT; Tschida, B; Moriarity, B; Largaespada, D; Roussel, MF; Korshunov, A; Reifenberger, G; Pfister, SM; Lichter, P; Kawauchi, D; Gronych, J Somatic CRISPR/Cas9-mediated tumour suppressor disruption enables versatile brain tumour modelling.
Nat Commun. 2015; 6(3):7391-7391 Doi: 10.1038/ncomms8391 [OPEN ACCESS]
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2014

Akilzhanova, A; Guelly, C; Nuralinov, O; Nurkina, Z; Nazhat, D; Smagulov, S; Tursunbekov, A; Alzhanova, A; Rashbayeva, G; Abdrakhmanov, A; Dosmagambet, S; Trajanoski, S; Zhumadilov, Z; Sharman, A; Bekbosynova, M RYR2 sequencing reveals novel missense mutations in a Kazakh idiopathic ventricular tachycardia study cohort.
PLoS One. 2014; 9(6):e101059-e101059 Doi: 10.1371/journal.pone.0101059 (- Case Report) [OPEN ACCESS]
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Asadollahi, R; Oneda, B; Joset, P; Azzarello-Burri, S; Bartholdi, D; Steindl, K; Vincent, M; Cobilanschi, J; Sticht, H; Baldinger, R; Reissmann, R; Sudholt, I; Thiel, CT; Ekici, AB; Reis, A; Bijlsma, EK; Andrieux, J; Dieux, A; FitzPatrick, D; Ritter, S; Baumer, A; Latal, B; Plecko, B; Jenni, OG; Rauch, A The clinical significance of small copy number variants in neurodevelopmental disorders.
J Med Genet. 2014; 51(10): 677-688. Doi: 10.1136/jmedgenet-2014-102588 [OPEN ACCESS]
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Basmanav, FB; Oprisoreanu, AM; Pasternack, SM; Thiele, H; Fritz, G; Wenzel, J; Größer, L; Wehner, M; Wolf, S; Fagerberg, C; Bygum, A; Altmüller, J; Rütten, A; Parmentier, L; El Shabrawi-Caelen, L; Hafner, C; Nürnberg, P; Kruse, R; Schoch, S; Hanneken, S; Betz, RC Mutations in POGLUT1, encoding protein O-glucosyltransferase 1, cause autosomal-dominant Dowling-Degos disease.
Am J Hum Genet. 2014; 94(1):135-143 Doi: 10.1016/j.ajhg.2013.12.003 [OPEN ACCESS]
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Gabriel, C; Fürst, D; Faé, I; Wenda, S; Zollikofer, C; Mytilineos, J; Fischer, GF HLA typing by next-generation sequencing - getting closer to reality.
Tissue Antigens. 2014; 83(2): 65-75. Doi: 10.1111/tan.12298
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Kienesberger, S; Sprenger, H; Wolfgruber, S; Halwachs, B; Thallinger, GG; Perez-Perez, GI; Blaser, MJ; Zechner, EL; Gorkiewicz, G Comparative genome analysis of Campylobacter fetus subspecies revealed horizontally acquired genetic elements important for virulence and niche specificity.
PLoS One. 2014; 9(1):e85491-e85491 Doi: 10.1371/journal.pone.0085491 [OPEN ACCESS]
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Shah, MH; Bhat, V; Shetty, JS; Kumar, A Whole exome sequencing identifies a novel splice-site mutation in ADAMTS17 in an Indian family with Weill-Marchesani syndrome.
Mol Vis. 2014; 20(4):790-796 (- Case Report) [OPEN ACCESS]
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2013

Busam, KJ; Wanna, M; Wiesner, T Multiple epithelioid Spitz nevi or tumors with loss of BAP1 expression: a clue to a hereditary tumor syndrome.
JAMA Dermatol. 2013; 149(3): 335-339. Doi: 10.1001/jamadermatol.2013.1529 (- Case Report) [OPEN ACCESS]
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Griewank, KG; Westekemper, H; Murali, R; Mach, M; Schilling, B; Wiesner, T; Schimming, T; Livingstone, E; Sucker, A; Grabellus, F; Metz, C; Süsskind, D; Hillen, U; Speicher, MR; Woodman, SE; Steuhl, KP; Schadendorf, D Conjunctival melanomas harbor BRAF and NRAS mutations and copy number changes similar to cutaneous and mucosal melanomas.
Clin Cancer Res. 2013; 19(12):3143-3152 Doi: 10.1158/1078-0432.CCR-13-0163 [OPEN ACCESS]
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Heitzer, E; Auer, M; Gasch, C; Pichler, M; Ulz, P; Hoffmann, EM; Lax, S; Waldispuehl-Geigl, J; Mauermann, O; Lackner, C; Höfler, G; Eisner, F; Sill, H; Samonigg, H; Pantel, K; Riethdorf, S; Bauernhofer, T; Geigl, JB; Speicher, MR Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing.
Cancer Res. 2013; 73(10):2965-2975 Doi: 10.1158/0008-5472.CAN-12-4140 [OPEN ACCESS]
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Lajin, B; Alhaj Sakur, A; Alachkar, A Association between polymorphisms in apoptotic genes and susceptibility for developing breast cancer in Syrian women.
Breast Cancer Res Treat. 2013; 138(2):611-619 Doi: 10.1007/s10549-013-2467-4
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Leitner, E; Valentin, T; Hoenigl, M; Lanz, P; Flick, H; Zollner-Schwetz, I; Grisold, AJ; Feierl, G; Krause, R First report of Nocardia asiatica olecranon bursitis in an immunocompetent traveler returning to Austria.
J Clin Microbiol. 2013; 51(7):2461-2462 Doi: 10.1128/JCM.00517-13 (- Case Report) [OPEN ACCESS]
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Meyer, FR; Grausgruber, H; Binter, C; Mair, GE; Guelly, C; Vogl, C; Steinborn, R Cross-platform microarray meta-analysis for the mouse jejunum selects novel reference genes with highly uniform levels of expression.
PLoS One. 2013; 8(5):e63125-e63125 Doi: 10.1371/journal.pone.0063125 [OPEN ACCESS]
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Probst, AJ; Auerbach, AK; Moissl-Eichinger, C Archaea on human skin.
PLoS One. 2013; 8(6):e65388-e65388 Doi: 10.1371/journal.pone.0065388 [OPEN ACCESS]
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Vaishampayan, P; Moissl-Eichinger, C; Pukall, R; Schumann, P; Spröer, C; Augustus, A; Roberts, AH; Namba, G; Cisneros, J; Salmassi, T; Venkateswaran, K Description of Tersicoccus phoenicis gen. nov., sp. nov. isolated from spacecraft assembly clean room environments.
Int J Syst Evol Microbiol. 2013; 63(Pt 7):2463-2471 Doi: 10.1099/ijs.0.047134-0
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2012

Dufke, C; Schlipf, N; Schule, R; Bonin, M; Auer-Grumbach, M; Stevanin, G; Depienne, C; Kassubek, J; Klebe, S; Klimpe, S; Klopstock, T; Otto, S; Poths, S; Seibel, A; Stolze, H; Gal, A; Schols, L; Bauer, P; A high-throughput resequencing microarray for autosomal dominant spastic paraplegia genes.
NEUROGENETICS. 2012; 13(3): 215-227. Doi: 10.1007/s10048-012-0329-6
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Kola, A; Kohler, C; Pfeifer, Y; Schwab, F; Kühn, K; Schulz, K; Balau, V; Breitbach, K; Bast, A; Witte, W; Gastmeier, P; Steinmetz, I High prevalence of extended-spectrum-β-lactamase-producing Enterobacteriaceae in organic and conventional retail chicken meat, Germany.
J Antimicrob Chemother. 2012; 67(11):2631-2634 Doi: 10.1093/jac/dks295 [OPEN ACCESS]
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Rinner, B; Gallè, B; Trajanoski, S; Fischer, C; Hatz, M; Maierhofer, T; Michelitsch, G; Moinfar, F; Stelzer, I; Pfragner, R; Guelly, C Molecular evidence for the bi-clonal origin of neuroendocrine tumor derived metastases.
BMC Genomics. 2012; 13(6):594-594 Doi: 10.1186/1471-2164-13-594 [OPEN ACCESS]
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Ritari, J; Koskinen, K; Hultman, J; Kurola, JM; Kymäläinen, M; Romantschuk, M; Paulin, L; Auvinen, P Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation.
BMC Microbiol. 2012; 12: 121-121. Doi: 10.1186/1471-2180-12-121 [OPEN ACCESS]
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Sayers, EW; Barrett, T; Benson, DA; Bolton, E; Bryant, SH; Canese, K; Chetvernin, V; Church, DM; Dicuccio, M; Federhen, S; Feolo, M; Fingerman, IM; Geer, LY; Helmberg, W; Kapustin, Y; Krasnov, S; Landsman, D; Lipman, DJ; Lu, Z; Madden, TL; Madej, T; Maglott, DR; Marchler-Bauer, A; Miller, V; Karsch-Mizrachi, I; Ostell, J; Panchenko, A; Phan, L; Pruitt, KD; Schuler, GD; Sequeira, E; Sherry, ST; Shumway, M; Sirotkin, K; Slotta, D; Souvorov, A; Starchenko, G; Tatusova, TA; Wagner, L; Wang, Y; Wilbur, WJ; Yaschenko, E; Ye, J Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2012; 40(Database issue):D13-D25 Doi: 10.1093/nar/gkr1184 [OPEN ACCESS]
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2011

Aigelsreiter, A; Gerlza, T; Deutsch, AJ; Leitner, E; Beham-Schmid, C; Beham, A; Popper, H; Borel, N; Pospischil, A; Raderer, M; Kessler, HH; Neumeister, P Chlamydia psittaci Infection in nongastrointestinal extranodal MALT lymphomas and their precursor lesions.
Am J Clin Pathol. 2011; 135(1): 70-75. Doi: 10.1309/AJCPXMDRT1SY6KIV [OPEN ACCESS]
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Brandt, S; Apprich, V; Hackl, V; Tober, R; Danzer, M; Kainzbauer, C; Gabriel, C; Stanek, C; Kofler, J Prevalence of bovine papillomavirus and Treponema DNA in bovine digital dermatitis lesions.
Vet Microbiol. 2011; 148(2-4): 161-167. Doi: 10.1016/j.vetmic.2010.08.031
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Guelly, C; Zhu, PP; Leonardis, L; Papic, L; Zidar, J; Schabhüttl, M; Strohmaier, H; Weis, J; Strom, TM; Baets, J; Willems, J; De Jonghe, P; Reilly, MM; Fröhlich, E; Hatz, M; Trajanoski, S; Pieber, TR; Janecke, AR; Blackstone, C; Auer-Grumbach, M Targeted high-throughput sequencing identifies mutations in atlastin-1 as a cause of hereditary sensory neuropathy type I.
Am J Hum Genet. 2011; 88(1):99-105 Doi: 10.1016/j.ajhg.2010.12.003 [OPEN ACCESS]
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Kienesberger, S; Schober Trummler, C; Fauster, A; Lang, S; Sprenger, H; Gorkiewicz, G; Zechner, EL Interbacterial macromolecular transfer by the Campylobacter fetus subsp. venerealis type IV secretion system.
J Bacteriol. 2011; 193(3):744-758 Doi: 10.1128/JB.00798-10 [OPEN ACCESS]
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Koskinen, K; Hultman, J; Paulin, L; Auvinen, P; Kankaanpää, H Spatially differing bacterial communities in water columns of the northern Baltic Sea.
FEMS Microbiol Ecol. 2011; 75(1): 99-110. Doi: 10.1111/j.1574-6941.2010.00987.x [OPEN ACCESS]
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Maritschnegg, P; Sovinz, P; Lackner, H; Benesch, M; Nebl, A; Schwinger, W; Walochnik, J; Urban, C Granulomatous amebic encephalitis in a child with acute lymphoblastic leukemia successfully treated with multimodal antimicrobial therapy and hyperbaric oxygen.
J Clin Microbiol. 2011; 49(1): 446-448. Doi: 10.1128/JCM.01456-10 [OPEN ACCESS]
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Pansuriya, TC; van Eijk, R; d'Adamo, P; van Ruler, MA; Kuijjer, ML; Oosting, J; Cleton-Jansen, AM; van Oosterwijk, JG; Verbeke, SL; Meijer, D; van Wezel, T; Nord, KH; Sangiorgi, L; Toker, B; Liegl-Atzwanger, B; San-Julian, M; Sciot, R; Limaye, N; Kindblom, LG; Daugaard, S; Godfraind, C; Boon, LM; Vikkula, M; Kurek, KC; Szuhai, K; French, PJ; Bove, JV Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell hemangioma in Ollier disease and Maffucci syndrome.
NAT GENET. 2011; 43(12): 1256-1261. Doi: 10.1038/ng.1004 [OPEN ACCESS]
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Pippal, JB; Cheung, CM; Yao, YZ; Brennan, FE; Fuller, PJ Characterization of the zebrafish (Danio rerio) mineralocorticoid receptor.
Mol Cell Endocrinol. 2011; 332(1-2):58-66 Doi: 10.1016/j.mce.2010.09.014
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Prokesch, A; Bogner-Strauss, JG; Hackl, H; Rieder, D; Neuhold, C; Walenta, E; Krogsdam, A; Scheideler, M; Papak, C; Wong, WC; Vinson, C; Eisenhaber, F; Trajanoski, Z Arxes: retrotransposed genes required for adipogenesis.
Nucleic Acids Res. 2011; 39(8): 3224-3239. Doi: 10.1093/nar/gkq1289 [OPEN ACCESS]
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Raggam, RB; Salzer, HJF; Marth, E; Heiling, B; Paulitsch, AH; Buzina, W Molecular detection and characterisation of fungal heat shock protein 60
Mycoses. 2011; 54(5):e394-e399 Doi: 10.1111/j.1439-0507.2010.01933.x
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