Medizinische Universität Graz Austria/Österreich - Forschungsportal - Medical University of Graz

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Publikationen

Suchbegriffe: SEQUENCE ALIGNMENT - , . Treffer: 79

2021

Richter, G; Gui, T; Bourgeois, B; Koyani, CN; Ulz, P; Heitzer, E; von, Lewinski, D; Burgering, BMT; Malle, E; Madl, T β-catenin regulates FOXP2 transcriptional activity via multiple binding sites.
FEBS J. 2021; 288(10):3261-3284 Doi: 10.1111/febs.15656 [OPEN ACCESS]
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2019

Dengler, MA; Robin, AY; Gibson, L; Li, MX; Sandow, JJ; Iyer, S; Webb, AI; Westphal, D; Dewson, G; Adams, JM BAX Activation: Mutations Near Its Proposed Non-canonical BH3 Binding Site Reveal Allosteric Changes Controlling Mitochondrial Association.
Cell Rep. 2019; 27(2):359-373 Doi: 10.1016/j.celrep.2019.03.040
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Mohammadzadeh, R; Azadegan, A; Kalani, BS Listeriolysin S may inhibit the anti-listerial properties of Lactobacillus plantarum.
Microb Pathog. 2019; 137: 103744 Doi: 10.1016/j.micpath.2019.103744
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2017

Crespo, N; Sánchez-Murcia, PA; Gago, F; Cejudo-Sanches, J; Galmes, MA; Fernández-Lucas, J; Mancheño, JM 2'-Deoxyribosyltransferase from Leishmania mexicana, an efficient biocatalyst for one-pot, one-step synthesis of nucleosides from poorly soluble purine bases.
Appl Microbiol Biotechnol. 2017; 101(19):7187-7200 Doi: 10.1007/s00253-017-8450-y
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Emmanouilidis, L; Schütz, U; Tripsianes, K; Madl, T; Radke, J; Rucktäschel, R; Wilmanns, M; Schliebs, W; Erdmann, R; Sattler, M Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19.
Nat Commun. 2017; 8(7):14635-14635 Doi: 10.1038/ncomms14635 [OPEN ACCESS]
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Oliva, C; Sánchez-Murcia, PA; Rico, E; Bravo, A; Menéndez, M; Gago, F; Jiménez-Ruiz, A Structure-based domain assignment in Leishmania infantum EndoG: characterization of a pH-dependent regulatory switch and a C-terminal extension that largely dictates DNA substrate preferences.
Nucleic Acids Res. 2017; 45(15):9030-9045 Doi: 10.1093/nar/gkx629 [OPEN ACCESS]
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2016

Anvarian, Z; Nojima, H; van Kappel, EC; Madl, T; Spit, M; Viertler, M; Jordens, I; Low, TY; van Scherpenzeel, RC; Kuper, I; Richter, K; Heck, AJ; Boelens, R; Vincent, JP; Rüdiger, SG; Maurice, MM Axin cancer mutants form nanoaggregates to rewire the Wnt signaling network.
Nat Struct Mol Biol. 2016; 23(4):324-332 Doi: 10.1038/nsmb.3191
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Sadovnick, AD; Traboulsee, AL; Bernales, CQ; Ross, JP; Forwell, AL; Yee, IM; Guillot-Noel, L; Fontaine, B; Cournu-Rebeix, I; Alcina, A; Fedetz, M; Izquierdo, G; Matesanz, F; Hilven, K; Dubois, B; Goris, A; Astobiza, I; Alloza, I; Antigüedad, A; Vandenbroeck, K; Akkad, DA; Aktas, O; Blaschke, P; Buttmann, M; Chan, A; Epplen, JT; Gerdes, LA; Kroner, A; Kubisch, C; Kümpfel, T; Lohse, P; Rieckmann, P; Zettl, UK; Zipp, F; Bertram, L; Lill, CM; Fernandez, O; Urbaneja, P; Leyva, L; Alvarez-Cermeño, JC; Arroyo, R; Garagorri, AM; García-Martínez, A; Villar, LM; Urcelay, E; Malhotra, S; Montalban, X; Comabella, M; Berger, T; Fazekas, F; Reindl, M; Schmied, MC; Zimprich, A; Vilariño-Güell, C Analysis of Plasminogen Genetic Variants in Multiple Sclerosis Patients.
G3 (Bethesda). 2016; 6(7):2073-2079 Doi: 10.1534/g3.116.030841 [OPEN ACCESS]
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Shabbir, MZ; Ali, M; Abbas, M; Chaudhry, UN; Zia-Ur-Rehman, UN; Munir, M Molecular characterization of infectious bursal disease viruses from Pakistan.
Arch Virol. 2016; 161(7):2001-2006 Doi: 10.1007/s00705-016-2869-9
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Ulrich, S; Posch, U; Helmberg, W; Schlenke, P HLA-A*68:02:11, a new HLA-A*68 allele identified during family HLA typing.
HLA. 2016; 88(4):197-198 Doi: 10.1111/tan.12875
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2015

Benavente, R; Esteban-Torres, M; Kohring, GW; Cortés-Cabrera, Á; Sánchez-Murcia, PA; Gago, F; Acebrón, I; de las Rivas, B; Muñoz, R; Mancheño, JM Enantioselective oxidation of galactitol 1-phosphate by galactitol-1-phosphate 5-dehydrogenase from Escherichia coli.
Acta Crystallogr D Biol Crystallogr. 2015; 71(Pt 7):1540-1554 Doi: 10.1107/S1399004715009281
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Chromikova, V; Mader, A; Hofbauer, S; Göbl, C; Madl, T; Gach, JS; Bauernfried, S; Furtmüller, PG; Forthal, DN; Mach, L; Obinger, C; Kunert, R Introduction of germline residues improves the stability of anti-HIV mAb 2G12-IgM.
Biochim Biophys Acta. 2015; 1854(10 Pt A):1536-1544 Doi: 10.1016/j.bbapap.2015.02.018 [OPEN ACCESS]
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Heidari, A; Tongsook, C; Najafipour, R; Musante, L; Vasli, N; Garshasbi, M; Hu, H; Mittal, K; McNaughton, AJ; Sritharan, K; Hudson, M; Stehr, H; Talebi, S; Moradi, M; Darvish, H; Arshad Rafiq, M; Mozhdehipanah, H; Rashidinejad, A; Samiei, S; Ghadami, M; Windpassinger, C; Gillessen-Kaesbach, G; Tzschach, A; Ahmed, I; Mikhailov, A; Stavropoulos, DJ; Carter, MT; Keshavarz, S; Ayub, M; Najmabadi, H; Liu, X; Ropers, HH; Macheroux, P; Vincent, JB Mutations in the histamine N-methyltransferase gene, HNMT, are associated with nonsyndromic autosomal recessive intellectual disability.
Hum Mol Genet. 2015; 24(20):5697-5710 Doi: 10.1093/hmg/ddv286 (- Case Report) [OPEN ACCESS]
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Kolanczyk, M; Krawitz, P; Hecht, J; Hupalowska, A; Miaczynska, M; Marschner, K; Schlack, C; Emmerich, D; Kobus, K; Kornak, U; Robinson, PN; Plecko, B; Grangl, G; Uhrig, S; Mundlos, S; Horn, D Missense variant in CCDC22 causes X-linked recessive intellectual disability with features of Ritscher-Schinzel/3C syndrome.
Eur J Hum Genet. 2015; 23(5):633-638 Doi: 10.1038/ejhg.2014.109 (- Case Report) [OPEN ACCESS]
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Niklas, N; Hafenscher, J; Barna, A; Wiesinger, K; Pröll, J; Dreiseitl, S; Preuner-Stix, S; Valent, P; Lion, T; Gabriel, C cFinder: definition and quantification of multiple haplotypes in a mixed sample.
BMC Res Notes. 2015; 8(9):422-422 Doi: 10.1186/s13104-015-1382-7 [OPEN ACCESS]
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Sinnige, T; Houben, K; Pritisanac, I; Renault, M; Boelens, R; Baldus, M Insight into the conformational stability of membrane-embedded BamA using a combined solution and solid-state NMR approach.
J Biomol NMR. 2015; 61(3-4):321-32 Doi: 10.1007/s10858-014-9891-6
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2014

Khan, MA; Rupp, VM; Orpinell, M; Hussain, MS; Altmüller, J; Steinmetz, MO; Enzinger, C; Thiele, H; Höhne, W; Nürnberg, G; Baig, SM; Ansar, M; Nürnberg, P; Vincent, JB; Speicher, MR; Gönczy, P; Windpassinger, C A missense mutation in the PISA domain of HsSAS-6 causes autosomal recessive primary microcephaly in a large consanguineous Pakistani family.
Hum Mol Genet. 2014; 23(22):5940-5949 Doi: 10.1093/hmg/ddu318 [OPEN ACCESS]
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Niklas, N; Pröll, J; Weinberger, J; Zopf, A; Wiesinger, K; Krismer, K; Bettelheim, P; Gabriel, C Qualifying high-throughput immune repertoire sequencing.
Cell Immunol. 2014; 288(1-2): 31-38. Doi: 10.1016/j.cellimm.2014.02.001
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Pabinger, S; Dander, A; Fischer, M; Snajder, R; Sperk, M; Efremova, M; Krabichler, B; Speicher, MR; Zschocke, J; Trajanoski, Z A survey of tools for variant analysis of next-generation genome sequencing data.
Brief Bioinform. 2014; 15(2):256-278 Doi: 10.1093/bib/bbs086 [OPEN ACCESS]
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Polin, H; Danzer, M; Reiter, A; Brisner, M; Gaszner, W; Weinberger, J; Gabriel, C MN typing discrepancies based on GYPA-B-A hybrid.
Vox Sang. 2014; 107(4): 393-398. Doi: 10.1111/vox.12168
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Rupp, V; Rauf, S; Naveed, I; Windpassinger, C; Mir, A A novel single base pair duplication in WDR62 causes primary microcephaly.
BMC Med Genet. 2014; 15(10):107-107 Doi: 10.1186/s12881-014-0107-4 (- Case Report) [OPEN ACCESS]
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Schulz, E; Klampfl, P; Holzapfel, S; Janecke, AR; Ulz, P; Renner, W; Kashofer, K; Nojima, S; Leitner, A; Zebisch, A; Wölfler, A; Hofer, S; Gerger, A; Lax, S; Beham-Schmid, C; Steinke, V; Heitzer, E; Geigl, JB; Windpassinger, C; Hoefler, G; Speicher, MR; Boland, CR; Kumanogoh, A; Sill, H Germline variants in the SEMA4A gene predispose to familial colorectal cancer type X.
Nat Commun. 2014; 5(10):5191-5191 Doi: 10.1038/ncomms6191 [OPEN ACCESS]
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2013

Espino-Rammer, L; Ribitsch, D; Przylucka, A; Marold, A; Greimel, KJ; Herrero Acero, E; Guebitz, GM; Kubicek, CP; Druzhinina, IS Two novel class II hydrophobins from Trichoderma spp. stimulate enzymatic hydrolysis of poly(ethylene terephthalate) when expressed as fusion proteins.
Appl Environ Microbiol. 2013; 79(14):4230-4238 Doi: 10.1128/AEM.01132-13 [OPEN ACCESS]
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Gordon, CT; Petit, F; Kroisel, PM; Jakobsen, L; Zechi-Ceide, RM; Oufadem, M; Bole-Feysot, C; Pruvost, S; Masson, C; Tores, F; Hieu, T; Nitschké, P; Lindholm, P; Pellerin, P; Guion-Almeida, ML; Kokitsu-Nakata, NM; Vendramini-Pittoli, S; Munnich, A; Lyonnet, S; Holder-Espinasse, M; Amiel, J Mutations in endothelin 1 cause recessive auriculocondylar syndrome and dominant isolated question-mark ears.
Am J Hum Genet. 2013; 93(6):1118-1125 Doi: 10.1016/j.ajhg.2013.10.023 (- Case Report) [OPEN ACCESS]
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Nevado, B; Mautner, S; Sturmbauer, C; Verheyen, E Water-level fluctuations and metapopulation dynamics as drivers of genetic diversity in populations of three Tanganyikan cichlid fish species.
Mol Ecol. 2013; 22(15): 3933-3948. Doi: 10.1111/mec.12374 [OPEN ACCESS]
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Thomas, G; Betters, JL; Lord, CC; Brown, AL; Marshall, S; Ferguson, D; Sawyer, J; Davis, MA; Melchior, JT; Blume, LC; Howlett, AC; Ivanova, PT; Milne, SB; Myers, DS; Mrak, I; Leber, V; Heier, C; Taschler, U; Blankman, JL; Cravatt, BF; Lee, RG; Crooke, RM; Graham, MJ; Zimmermann, R; Brown, HA; Brown, JM The serine hydrolase ABHD6 Is a critical regulator of the metabolic syndrome.
Cell Rep. 2013; 5(2):508-520 Doi: 10.1016/j.celrep.2013.08.047 [OPEN ACCESS]
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Ulrich, S; Posch, U; Lanzer, G Detection of a new HLA-A allele, designated HLA-A*32:53.
Tissue Antigens. 2013; 82(5):348-348 Doi: 10.1111/tan.12205
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2012

Helmberg, W Bioinformatic Databases and Resources in the public domain to aid HLA research
Tissue Antigens. 2012; 80(4):295-304 Doi: 10.1111/tan.12000
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Rengachari, S; Bezerra, GA; Riegler-Berket, L; Gruber, CC; Sturm, C; Taschler, U; Boeszoermenyi, A; Dreveny, I; Zimmermann, R; Gruber, K; Oberer, M The structure of monoacylglycerol lipase from Bacillus sp. H257 reveals unexpected conservation of the cap architecture between bacterial and human enzymes.
Biochim Biophys Acta. 2012; 1821(7): 1012-1021. Doi: 10.1016/j.bbalip.2012.04.006 [OPEN ACCESS]
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Sayers, EW; Barrett, T; Benson, DA; Bolton, E; Bryant, SH; Canese, K; Chetvernin, V; Church, DM; Dicuccio, M; Federhen, S; Feolo, M; Fingerman, IM; Geer, LY; Helmberg, W; Kapustin, Y; Krasnov, S; Landsman, D; Lipman, DJ; Lu, Z; Madden, TL; Madej, T; Maglott, DR; Marchler-Bauer, A; Miller, V; Karsch-Mizrachi, I; Ostell, J; Panchenko, A; Phan, L; Pruitt, KD; Schuler, GD; Sequeira, E; Sherry, ST; Shumway, M; Sirotkin, K; Slotta, D; Souvorov, A; Starchenko, G; Tatusova, TA; Wagner, L; Wang, Y; Wilbur, WJ; Yaschenko, E; Ye, J Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2012; 40(Database issue):D13-D25 Doi: 10.1093/nar/gkr1184 [OPEN ACCESS]
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2011

Norville, IH; Breitbach, K; Eske-Pogodda, K; Harmer, NJ; Sarkar-Tyson, M; Titball, RW; Steinmetz, I A novel FK-506-binding-like protein that lacks peptidyl-prolyl isomerase activity is involved in intracellular infection and in vivo virulence of Burkholderia pseudomallei.
Microbiology. 2011; 157(Pt 9):2629-2638 Doi: 10.1099/mic.0.049163-0 [OPEN ACCESS]
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Pippal, JB; Cheung, CM; Yao, YZ; Brennan, FE; Fuller, PJ Characterization of the zebrafish (Danio rerio) mineralocorticoid receptor.
Mol Cell Endocrinol. 2011; 332(1-2):58-66 Doi: 10.1016/j.mce.2010.09.014
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Sayers, EW; Barrett, T; Benson, DA; Bolton, E; Bryant, SH; Canese, K; Chetvernin, V; Church, DM; DiCuccio, M; Federhen, S; Feolo, M; Fingerman, IM; Geer, LY; Helmberg, W; Kapustin, Y; Landsman, D; Lipman, DJ; Lu, Z; Madden, TL; Madej, T; Maglott, DR; Marchler-Bauer, A; Miller, V; Mizrachi, I; Ostell, J; Panchenko, A; Phan, L; Pruitt, KD; Schuler, GD; Sequeira, E; Sherry, ST; Shumway, M; Sirotkin, K; Slotta, D; Souvorov, A; Starchenko, G; Tatusova, TA; Wagner, L; Wang, Y; Wilbur, WJ; Yaschenko, E; Ye, J Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2011; 39(Database issue):D38-D51 Doi: 10.1093/nar/gkq1172 [OPEN ACCESS]
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Tripsianes, K; Madl, T; Machyna, M; Fessas, D; Englbrecht, C; Fischer, U; Neugebauer, KM; Sattler, M Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins.
Nat Struct Mol Biol. 2011; 18(12): 1414-1420. Doi: 10.1038/nsmb.2185
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2010

Bogner-Strauss, JG; Prokesch, A; Sanchez-Cabo, F; Rieder, D; Hackl, H; Duszka, K; Krogsdam, A; Di Camillo, B; Walenta, E; Klatzer, A; Lass, A; Pinent, M; Wong, WC; Eisenhaber, F; Trajanoski, Z Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ.
Cell Mol Life Sci. 2010; 67(23): 4049-4064. Doi: 10.1007/s00018-010-0424-5
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Görzer, I; Guelly, C; Trajanoski, S; Puchhammer-Stöckl, E Deep sequencing reveals highly complex dynamics of human cytomegalovirus genotypes in transplant patients over time.
J Virol. 2010; 84(14): 7195-7203. Doi: 10.1128/JVI.00475-10 [OPEN ACCESS]
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Huang, J; Zhang, J; Lei, T; Chen, X; Zhang, Y; Zhou, L; Yu, A; Chen, Z; Zhou, R; Yang, Z Cloning of porcine chemerin, ChemR23 and GPR1 and their involvement in regulation of lipogenesis.
BMB Rep. 2010; 43(7): 491-498. Doi: 10.5483/BMBRep.2010.43.7.491 [OPEN ACCESS]
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Ribitsch, D; Karl, W; Birner-Gruenberger, R; Gruber, K; Eiteljoerg, I; Remler, P; Wieland, S; Siegert, P; Maurer, KH; Schwab, H C-terminal truncation of a metagenome-derived detergent protease for effective expression in E. coli.
J Biotechnol. 2010; 150(3):408-416 Doi: 10.1016/j.jbiotec.2010.09.947
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Soehn, AS; Franck, T; Biskup, S; Giaime, E; Melle, C; Rott, R; Cebo, D; Kalbacher, H; Ott, E; Pahnke, J; Meitinger, T; Krüger, R; Gasser, T; Berg, D; von Eggeling, F; Engelender, S; da Costa, CA; Riess, O Periphilin is a novel interactor of synphilin-1, a protein implicated in Parkinson's disease.
Neurogenetics. 2010; 11(2):203-215 Doi: 10.1007/s10048-009-0215-z
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2009

Hofmeister-Mueller, V; Vetter-Kauczok, CS; Ullrich, R; Meder, K; Lukanidin, E; Broecker, EB; Straten, PT; Andersen, MH; Schrama, D; Becker, JC Immunogenicity of HLA-A1-restricted peptides derived from S100A4 (metastasin 1) in melanoma patients.
Cancer Immunol Immunother. 2009; 58(8):1265-1273 Doi: 10.1007/s00262-008-0640-0 [OPEN ACCESS]
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Wölfler, A; Irandoust, M; Meenhuis, A; Gits, J; Roovers, O; Touw, IP Site-specific ubiquitination determines lysosomal sorting and signal attenuation of the granulocyte colony-stimulating factor receptor.
Traffic. 2009; 10(8): 1168-1179. Doi: 10.1111/j.1600-0854.2009.00928.x [OPEN ACCESS]
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2008

Hermann, M; Kietzmann, MU; Ivancic, M; Zenzmaier, C; Luiten, RGM; Skranc, W; Wubbolts, M; Winkler, M; Birner-Gruenberger, R; Pichler, H; Schwab, H Alternative pig liver esterase (APLE) - cloning, identification and functional expression in Pichia pastoris of a versatile new biocatalyst.
J BIOTECHNOL. 2008; 133(3): 301-310. Doi: 10.1016/j.jbiotec.2007.10.010
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Smolikov, S; Schild-Prüfert, K; Colaiácovo, MP CRA-1 uncovers a double-strand break-dependent pathway promoting the assembly of central region proteins on chromosome axes during C. elegans meiosis.
PLoS Genet. 2008; 4(6): e1000088-e1000088. Doi: 10.1371/journal.pgen.1000088 [OPEN ACCESS]
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Wheeler, DL; Barrett, T; Benson, DA; Bryant, SH; Canese, K; Chetvernin, V; Church, DM; Dicuccio, M; Edgar, R; Federhen, S; Feolo, M; Geer, LY; Helmberg, W; Kapustin, Y; Khovayko, O; Landsman, D; Lipman, DJ; Madden, TL; Maglott, DR; Miller, V; Ostell, J; Pruitt, KD; Schuler, GD; Shumway, M; Sequeira, E; Sherry, ST; Sirotkin, K; Souvorov, A; Starchenko, G; Tatusov, RL; Tatusova, TA; Wagner, L; Yaschenko, E Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2008; 36(Database issue):D13-D21 Doi: 10.1093/nar/gkm1000 [OPEN ACCESS]
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2007

Tiwari, R; Köffel, R; Schneiter, R An acetylation/deacetylation cycle controls the export of sterols and steroids from S. cerevisiae.
EMBO J. 2007; 26(24):5109-5119 Doi: 10.1038/sj.emboj.7601924 [OPEN ACCESS]
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2006

Mátyás, G; Arnold, E; Carrel, T; Baumgartner, D; Boileau, C; Berger, W; Steinmann, B Identification and in silico analyses of novel TGFBR1 and TGFBR2 mutations in Marfan syndrome-related disorders.
Hum Mutat. 2006; 27(8):760-769 Doi: 10.1002/humu.20353
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Wakula, P; Beullens, M; van Eynde, A; Ceulemans, H; Stalmans, W; Bollen, M The translation initiation factor eIF2beta is an interactor of protein phosphatase-1.
Biochem J. 2006; 400(2): 377-383. Doi: 10.1042/BJ20060758 [OPEN ACCESS]
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Wheeler, DL; Barrett, T; Benson, DA; Bryant, SH; Canese, K; Chetvernin, V; Church, DM; DiCuccio, M; Edgar, R; Federhen, S; Geer, LY; Helmberg, W; Kapustin, Y; Kenton, DL; Khovayko, O; Lipman, DJ; Madden, TL; Maglott, DR; Ostell, J; Pruitt, KD; Schuler, GD; Schriml, LM; Sequeira, E; Sherry, ST; Sirotkin, K; Souvorov, A; Starchenko, G; Suzek, TO; Tatusov, R; Tatusova, TA; Wagner, L; Yaschenko, E Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2006; 34(Database issue): D173-D180. Doi: 10.1093/nar/gkj158 [OPEN ACCESS]
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2005

Oliyarnyk, O; Renner, W; Paulweber, B; Wascher, TC Interindividual differences of response to statin treatment cannot be explained by variations of the human gene for RhoA.
Biochem Genet. 2005; 43(3-4):143-148 Doi: 10.1007/s10528-005-1507-0
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Ruckenstuhl, C; Eidenberger, A; Lang, S; Turnowsky, F Single amino acid exchanges in FAD-binding domains of squalene epoxidase of Saccharomyces cerevisiae lead to either loss of functionality or terbinafine sensitivity.
Biochem Soc Trans. 2005; 33(Pt 5):1197-1201 Doi: 10.1042/BST20051197 [OPEN ACCESS]
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