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Publikationen

Suchbegriffe: MODELS, MOLECULAR - , . Treffer: 127

2021

Zhang, Y; Dijkman, PM; Zou, R; Zandl-Lang, M; Sanchez, RM; Eckhardt-Strelau, L; Köfeler, H; Vogel, H; Yuan, S; Kudryashev, M Asymmetric opening of the homopentameric 5-HT_3A serotonin receptor in lipid bilayers.
Nat Commun. 2021; 12(1):1074-1074 Doi: 10.1038/s41467-021-21016-7 [OPEN ACCESS]
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2020

Spreitzer, E; Usluer, S; Madl, T Probing Surfaces in Dynamic Protein Interactions.
J Mol Biol. 2020; 432(9):2949-2972 Doi: 10.1016/j.jmb.2020.02.032 [OPEN ACCESS]
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2019

Avagliano, D; Sánchez-Murcia, PA; González, L Directional and regioselective hole injection of spiropyran photoswitches intercalated into A/T-duplex DNA.
Phys Chem Chem Phys. 2019; 21(32):17971-17977 Doi: 10.1039/c9cp03398j [OPEN ACCESS]
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Bernardo-García, N; Sánchez-Murcia, PA; Espaillat, A; Martínez-Caballero, S; Cava, F; Hermoso, JA; Gago, F Cold-induced aldimine bond cleavage by Tris in Bacillus subtilis alanine racemase.
Org Biomol Chem. 2019; 17(17):4350-4358 Doi: 10.1039/c9ob00223e
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Dengler, MA; Robin, AY; Gibson, L; Li, MX; Sandow, JJ; Iyer, S; Webb, AI; Westphal, D; Dewson, G; Adams, JM BAX Activation: Mutations Near Its Proposed Non-canonical BH3 Binding Site Reveal Allosteric Changes Controlling Mitochondrial Association.
Cell Rep. 2019; 27(2):359-373 Doi: 10.1016/j.celrep.2019.03.040
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Gavin, DP; Reen, FJ; Rocha-Martin, J; Abreu-Castilla, I; Woods, DF; Foley, AM; Sánchez-Murcia, PA; Schwarz, M; O'Neill, P; Maguire, AR; O'Gara, F Genome mining and characterisation of a novel transaminase with remote stereoselectivity.
Sci Rep. 2019; 9(1):20285-20285 Doi: 10.1038/s41598-019-56612-7 [OPEN ACCESS]
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Maity, D; Gigante, A; Sánchez-Murcia, PA; Sijbesma, E; Li, M; Bier, D; Mosel, S; Knauer, S; Ottmann, C; Schmuck, C Arginine mimetic appended peptide-based probes for fluorescence turn-on detection of 14-3-3 proteins.
Org Biomol Chem. 2019; 17(17):4359-4363 Doi: 10.1039/c9ob00620f
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Schopf, FH; Huber, EM; Dodt, C; Lopez, A; Biebl, MM; Rutz, DA; Mühlhofer, M; Richter, G; Madl, T; Sattler, M; Groll, M; Buchner, J The Co-chaperone Cns1 and the Recruiter Protein Hgh1 Link Hsp90 to Translation Elongation via Chaperoning Elongation Factor 2.
MOL CELL. 2019; 74(1): 73-87. Doi: 10.1016/j.molcel.2019.02.011 [OPEN ACCESS]
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2018

Torres-Salas, P; Bernal, V; López-Gallego, F; Martínez-Crespo, J; Sánchez-Murcia, PA; Barrera, V; Morales-Jiménez, R; García-Sánchez, A; Mañas-Fernández, A; Seoane, JM; Sagrera Polo, M; Miranda, JD; Calvo, J; Huertas, S; Torres, JL; Alcalde-Bascones, A; González-Barrera, S; Gago, F; Morreale, A; González-Barroso, MDM Engineering Erg10 Thiolase from Saccharomyces cerevisiae as a Synthetic Toolkit for the Production of Branched-Chain Alcohols.
Biochemistry. 2018; 57(8):1338-1348 Doi: 10.1021/acs.biochem.7b01186
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2017

Oliva, C; Sánchez-Murcia, PA; Rico, E; Bravo, A; Menéndez, M; Gago, F; Jiménez-Ruiz, A Structure-based domain assignment in Leishmania infantum EndoG: characterization of a pH-dependent regulatory switch and a C-terminal extension that largely dictates DNA substrate preferences.
Nucleic Acids Res. 2017; 45(15):9030-9045 Doi: 10.1093/nar/gkx629 [OPEN ACCESS]
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Schalli, M; Tysoe, C; Fischer, R; Pabst, BM; Thonhofer, M; Paschke, E; Rappitsch, T; Stütz, AE; Tschernutter, M; Windischhofer, W; Withers, SG N-Substituted 5-amino-1-hydroxymethyl-cyclopentanetriols: A new family of activity promotors for a G_M1-gangliosidosis related human lysosomal β-galactosidase mutant.
Carbohydr Res. 2017; 443-444(15):15-22 Doi: 10.1016/j.carres.2017.03.009
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Wallace, PW; Haernvall, K; Ribitsch, D; Zitzenbacher, S; Schittmayer, M; Steinkellner, G; Gruber, K; Guebitz, GM; Birner-Gruenberger, R PpEst is a novel PBAT degrading polyesterase identified by proteomic screening of Pseudomonas pseudoalcaligenes.
Appl Microbiol Biotechnol. 2017; 101(6):2291-2303 Doi: 10.1007/s00253-016-7992-8 [OPEN ACCESS]
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2016

Anvarian, Z; Nojima, H; van Kappel, EC; Madl, T; Spit, M; Viertler, M; Jordens, I; Low, TY; van Scherpenzeel, RC; Kuper, I; Richter, K; Heck, AJ; Boelens, R; Vincent, JP; Rüdiger, SG; Maurice, MM Axin cancer mutants form nanoaggregates to rewire the Wnt signaling network.
Nat Struct Mol Biol. 2016; 23(4):324-332 Doi: 10.1038/nsmb.3191
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Genes, CM; de Lucio, H; Sánchez-Murcia, PA; Gago, F; Jiménez-Ruiz, A Pro-death activity of a BH3 domain in an aquaporin from the protozoan parasite Leishmania.
Cell Death Dis. 2016; 7(7):e2318-e2318 Doi: 10.1038/cddis.2016.229 [OPEN ACCESS]
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Gutiérrez-Fernández, J; Saleh, M; Alcorlo, M; Gómez-Mejía, A; Pantoja-Uceda, D; Treviño, MA; Voß, F; Abdullah, MR; Galán-Bartual, S; Seinen, J; Sánchez-Murcia, PA; Gago, F; Bruix, M; Hammerschmidt, S; Hermoso, JA Modular Architecture and Unique Teichoic Acid Recognition Features of Choline-Binding Protein L (CbpL) Contributing to Pneumococcal Pathogenesis.
Sci Rep. 2016; 6(6):38094-38094 Doi: 10.1038/srep38094 [OPEN ACCESS]
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Hartlmüller, C; Göbl, C; Madl, T Prediction of Protein Structure Using Surface Accessibility Data.
Angew Chem Int Ed Engl. 2016; 55(39):11970-11974 Doi: 10.1002/anie.201604788 [OPEN ACCESS]
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Janowski, R; Scanu, S; Niessing, D; Madl, T Crystal and solution structural studies of mouse phospholipid hydroperoxide glutathione peroxidase 4.
Acta Crystallogr F Struct Biol Commun. 2016; 72(Pt 10):743-749 Doi: 10.1107/S2053230X16013686 [OPEN ACCESS]
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Kornmueller, K; Lehofer, B; Meindl, C; Fröhlich, E; Leitinger, G; Amenitsch, H; Prassl, R Peptides at the Interface: Self-Assembly of Amphiphilic Designer Peptides and Their Membrane Interaction Propensity.
Biomacromolecules. 2016; 17(11):3591-3601 Doi: 10.1021/acs.biomac.6b01089 [OPEN ACCESS]
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Pavkov-Keller, T; Bakhuis, J; Steinkellner, G; Jolink, F; Keijmel, E; Birner-Gruenberger, R; Gruber, K Structures of almond hydroxynitrile lyase isoenzyme 5 provide a rationale for the lack of oxidoreductase activity in flavin dependent HNLs.
J Biotechnol. 2016; 235(7):24-31 Doi: 10.1016/j.jbiotec.2016.04.013
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Perz, V; Baumschlager, A; Bleymaier, K; Zitzenbacher, S; Hromic, A; Steinkellner, G; Pairitsch, A; Łyskowski, A; Gruber, K; Sinkel, C; Küper, U; Ribitsch, D; Guebitz, GM Hydrolysis of synthetic polyesters by Clostridium botulinum esterases.
Biotechnol Bioeng. 2016; 113(5): 1024-1034. Doi: 10.1002/bit.25874
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Redrejo-Rodríguez, M; Vigouroux, A; Mursalimov, A; Grin, I; Alili, D; Koshenov, Z; Akishev, Z; Maksimenko, A; Bissenbaev, AK; Matkarimov, BT; Saparbaev, M; Ishchenko, AA; Moréra, S Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA.
Biochimie. 2016; 128-129:20-33 Doi: 10.1016/j.biochi.2016.06.011 [OPEN ACCESS]
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Scharinger, B; Messner, B; Türkcan, A; Schuster, D; Vuorinen, A; Pitterl, F; Heinz, K; Arnhard, K; Laufer, G; Grimm, M; Stuppner, H; Oberacher, H; Eller, P; Ritsch, A; Bernhard, D Leoligin, the major lignan from Edelweiss, inhibits 3-hydroxy-3-methyl-glutaryl-CoA reductase and reduces cholesterol levels in ApoE-/- mice.
J Mol Cell Cardiol. 2016; 99(7):35-46 Doi: 10.1016/j.yjmcc.2016.08.003 [OPEN ACCESS]
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Thonhofer, M; Weber, P; Santana, AG; Fischer, R; Pabst, BM; Paschke, E; Schalli, M; Stütz, AE; Tschernutter, M; Windischhofer, W; Withers, SG Synthesis of C-5a-chain extended derivatives of 4-epi-isofagomine: Powerful β-galactosidase inhibitors and low concentration activators of GM1-gangliosidosis-related human lysosomal β-galactosidase.
Bioorg Med Chem Lett. 2016; 26(5):1438-1442 Doi: 10.1016/j.bmcl.2016.01.059
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Tuller, F; Holzer, H; Schanda, K; Aboulenein-Djamshidian, F; Höftberger, R; Khalil, M; Seifert-Held, T; Leutmezer, F; Berger, T; Reindl, M Characterization of the binding pattern of human aquaporin-4 autoantibodies in patients with neuromyelitis optica spectrum disorders.
J Neuroinflammation. 2016; 13(1):176-176 Doi: 10.1186/s12974-016-0642-3 [OPEN ACCESS]
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Weber, J; Bao, H; Hartlmüller, C; Wang, Z; Windhager, A; Janowski, R; Madl, T; Jin, P; Niessing, D Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha.
Elife. 2016; 5(7): Doi: 10.7554/eLife.11297 [OPEN ACCESS]
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Wenzl, K; Hofer, S; Troppan, K; Lassnig, M; Steinbauer, E; Wiltgen, M; Zulus, B; Renner, W; Beham-Schmid, C; Neumeister, P; Deutsch, A Higher incidence of the SNP Met 788 Ile in the coding region of A20 in diffuse large B cell lymphomas.
Tumour Biol. 2016; 37(4):4785-4789 Doi: 10.1007/s13277-015-4322-1 [OPEN ACCESS]
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Zierer, BK; Rübbelke, M; Tippel, F; Madl, T; Schopf, FH; Rutz, DA; Richter, K; Sattler, M; Buchner, J Importance of cycle timing for the function of the molecular chaperone Hsp90.
Nat Struct Mol Biol. 2016; 23(11):1020-1028 Doi: 10.1038/nsmb.3305 [OPEN ACCESS]
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2015

Benavente, R; Esteban-Torres, M; Kohring, GW; Cortés-Cabrera, Á; Sánchez-Murcia, PA; Gago, F; Acebrón, I; de las Rivas, B; Muñoz, R; Mancheño, JM Enantioselective oxidation of galactitol 1-phosphate by galactitol-1-phosphate 5-dehydrogenase from Escherichia coli.
Acta Crystallogr D Biol Crystallogr. 2015; 71(Pt 7):1540-1554 Doi: 10.1107/S1399004715009281
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de Castro, S; Fernández-Cureses, G; Andrei, G; Snoeck, R; Sánchez-Murcia, PA; Korba, B; Gago, F; Balzarini, J; Camarasa, MJ Conservation of antiviral activity and improved selectivity in PMEO-DAPym upon pyrimidine to triazine scaffold hopping.
Antiviral Res. 2015; 122(1):64-68 Doi: 10.1016/j.antiviral.2015.08.006
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Gherbovet, O; Sánchez-Murcia, PA; García Alvarez, MC; Bignon, J; Thoret, S; Gago, F; Roussi, F Synthesis and evaluation of hybrid molecules targeting the vinca domain of tubulin.
Org Biomol Chem. 2015; 13(10):3144-3154 Doi: 10.1039/c4ob02114b
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Hocking, HG; Häse, F; Madl, T; Zacharias, M; Rief, M; Žoldák, G A compact native 24-residue supersecondary structure derived from the villin headpiece subdomain.
Biophys J. 2015; 108(3):678-686 Doi: 10.1016/j.bpj.2014.11.3482 [OPEN ACCESS]
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Meyer, NH; Mayerhofer, H; Tripsianes, K; Blindow, S; Barths, D; Mewes, A; Weimar, T; Köhli, T; Bade, S; Madl, T; Frey, A; Haas, H; Mueller-Dieckmann, J; Sattler, M; Schramm, G A Crystallin Fold in the Interleukin-4-inducing Principle of Schistosoma mansoni Eggs (IPSE/α-1) Mediates IgE Binding for Antigen-independent Basophil Activation.
J Biol Chem. 2015; 290(36): 22111-22126. Doi: 10.1074/jbc.M115.675066 [OPEN ACCESS]
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Paolini, A; Baldassarre, A; Del Gaudio, I; Masotti, A Structural Features of the ATP-Binding Cassette (ABC) Transporter ABCA3.
Int J Mol Sci. 2015; 16(8):19631-19644 Doi: 10.3390/ijms160819631 [OPEN ACCESS]
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Riedl, S; Leber, R; Rinner, B; Schaider, H; Lohner, K; Zweytick, D Human lactoferricin derived di-peptides deploying loop structures induce apoptosis specifically in cancer cells through targeting membranous phosphatidylserine.
Biochim Biophys Acta. 2015; 1848(11 Pt A):2918-2931 Doi: 10.1016/j.bbamem.2015.07.018 [OPEN ACCESS]
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Sena, FV; Batista, AP; Catarino, T; Brito, JA; Archer, M; Viertler, M; Madl, T; Cabrita, EJ; Pereira, MM Type-II NADH:quinone oxidoreductase from Staphylococcus aureus has two distinct binding sites and is rate limited by quinone reduction.
Mol Microbiol. 2015; 98(2):272-288 Doi: 10.1111/mmi.13120 [OPEN ACCESS]
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Wang, SR; Yang, CG; Sánchez-Murcia, PA; Snyder, JP; Yan, N; Sáez-Calvo, G; Díaz, JF; Gago, F; Fang, WS Restoration of Microtubule Interaction and Cytotoxicity in D-seco Taxanes upon Incorporation of 20-Hydroxymethyl-4-allyloxy Groups.
Org Lett. 2015; 17(24):6098-6101 Doi: 10.1021/acs.orglett.5b03119
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Zafred, D; Steiner, B; Teufelberger, AR; Hromic, A; Karplus, PA; Schofield, CJ; Wallner, S; Macheroux, P Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
FEBS J. 2015; 282(16): 3060-3074. Doi: 10.1111/febs.13212
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2014

Bernkopf, M; Webersinke, G; Tongsook, C; Koyani, CN; Rafiq, MA; Ayaz, M; Müller, D; Enzinger, C; Aslam, M; Naeem, F; Schmidt, K; Gruber, K; Speicher, MR; Malle, E; Macheroux, P; Ayub, M; Vincent, JB; Windpassinger, C; Duba, HC Disruption of the methyltransferase-like 23 gene METTL23 causes mild autosomal recessive intellectual disability.
Hum Mol Genet. 2014; 23(15):4015-4023 Doi: 10.1093/hmg/ddu115 [OPEN ACCESS]
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Canales, A; Nieto, L; Rodríguez-Salarichs, J; Sánchez-Murcia, PA; Coderch, C; Cortés-Cabrera, A; Paterson, I; Carlomagno, T; Gago, F; Andreu, JM; Altmann, KH; Jiménez-Barbero, J; Díaz, JF Molecular recognition of epothilones by microtubules and tubulin dimers revealed by biochemical and NMR approaches.
ACS Chem Biol. 2014; 9(4):1033-1043 Doi: 10.1021/cb400673h
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Göbl, C; Madl, T; Simon, B; Sattler, M NMR approaches for structural analysis of multidomain proteins and complexes in solution.
Prog Nucl Magn Reson Spectrosc. 2014; 80(7):26-63 Doi: 10.1016/j.pnmrs.2014.05.003
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Goessweiner-Mohr, N; Fercher, C; Arends, K; Birner-Gruenberger, R; Laverde-Gomez, D; Huebner, J; Grohmann, E; Keller, W The type IV secretion protein TraK from the Enterococcus conjugative plasmid pIP501 exhibits a novel fold.
Acta Crystallogr D Biol Crystallogr. 2014; 70(Pt 4):1124-1135 Doi: 10.1107/S1399004714001606 [OPEN ACCESS]
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Karagöz, GE; Duarte, AM; Akoury, E; Ippel, H; Biernat, J; Morán Luengo, T; Radli, M; Didenko, T; Nordhues, BA; Veprintsev, DB; Dickey, CA; Mandelkow, E; Zweckstetter, M; Boelens, R; Madl, T; Rüdiger, SG Hsp90-Tau complex reveals molecular basis for specificity in chaperone action.
Cell. 2014; 156(5): 963-974. Doi: 10.1016/j.cell.2014.01.037 [OPEN ACCESS]
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Krump, C; Vogl, M; Brecker, L; Nidetzky, B; Kratzer, R Acceleration of an aldo-keto reductase by minimal loop engineering.
Protein Eng Des Sel. 2014; 27(7):245-248 Doi: 10.1093/protein/gzu021 [OPEN ACCESS]
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Lorenz, OR; Freiburger, L; Rutz, DA; Krause, M; Zierer, BK; Alvira, S; Cuéllar, J; Valpuesta, JM; Madl, T; Sattler, M; Buchner, J Modulation of the Hsp90 chaperone cycle by a stringent client protein.
Mol Cell. 2014; 53(6): 941-953. Doi: 10.1016/j.molcel.2014.02.003 [OPEN ACCESS]
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Ma, X; Rousseau, V; Sun, H; Lantuejoul, S; Filipits, M; Pirker, R; Popper, H; Mendiboure, J; Vataire, AL; Le Chevalier, T; Soria, JC; Brambilla, E; Dunant, A; Hainaut, P; IALT-Bio working group Significance of TP53 mutations as predictive markers of adjuvant cisplatin-based chemotherapy in completely resected non-small-cell lung cancer.
Mol Oncol. 2014; 8(3):555-564 Doi: 10.1016/j.molonc.2013.12.015 [OPEN ACCESS]
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Riedl, S; Rinner, B; Schaider, H; Lohner, K; Zweytick, D Killing of melanoma cells and their metastases by human lactoferricin derivatives requires interaction with the cancer marker phosphatidylserine.
Biometals. 2014; 27(5):981-997 Doi: 10.1007/s10534-014-9749-0 [OPEN ACCESS]
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2013

Bourgeois, B; Gilquin, B; Tellier-Lebègue, C; Östlund, C; Wu, W; Pérez, J; El Hage, P; Lallemand, F; Worman, HJ; Zinn-Justin, S Inhibition of TGF-β signaling at the nuclear envelope: characterization of interactions between MAN1, Smad2 and Smad3, and PPM1A.
Sci Signal. 2013; 6(280):ra49-ra49 Doi: 10.1126/scisignal.2003411 [OPEN ACCESS]
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Goessweiner-Mohr, N; Grumet, L; Arends, K; Pavkov-Keller, T; Gruber, CC; Gruber, K; Birner-Gruenberger, R; Kropec-Huebner, A; Huebner, J; Grohmann, E; Keller, W The 2.5 Å structure of the enterococcus conjugation protein TraM resembles VirB8 type IV secretion proteins.
J Biol Chem. 2013; 288(3):2018-2028 Doi: 10.1074/jbc.M112.428847 [OPEN ACCESS]
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Herrero Acero, E; Ribitsch, D; Dellacher, A; Zitzenbacher, S; Marold, A; Steinkellner, G; Gruber, K; Schwab, H; Guebitz, GM Surface engineering of a cutinase from Thermobifida cellulosilytica for improved polyester hydrolysis.
Biotechnol Bioeng. 2013; 110(10):2581-2590 Doi: 10.1002/bit.24930
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Ho, JE; Chen, WY; Chen, MH; Larson, MG; McCabe, EL; Cheng, S; Ghorbani, A; Coglianese, E; Emilsson, V; Johnson, AD; Walter, S; Franceschini, N; O'Donnell, CJ; CARDIoGRAM Consortium; CHARGE Inflammation Working Group; Dehghan, A; Lu, C; Levy, D; Newton-Cheh, C; CHARGE Heart Failure Working Group; Lin, H; Felix, JF; Schreiter, ER; Vasan, RS; Januzzi, JL; Lee, RT; Wang, TJ; Assimes, TL; Deloukas, P; Erdmann, J; Holm, H; Kathiresan, S; König, IR; McPherson, R; Reilly, MP; Roberts, R; Samani, NJ; Schunkert, H; Stewart, AF Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.
J Clin Invest. 2013; 123(10): 4208-4218. Doi: 10.1172/JCI67119 [OPEN ACCESS]
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