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** = Publications listed in SCI/SSCI/Pubmed

2022

Full paper/article (Journal)

** Ghaffari, Zaki, A; Erdoğan, YC; Akgul, Caglar, T; Eroglu, E Chemogenetic approaches to dissect the role of H2O2 in redox-dependent pathways using genetically encoded biosensors.
Biochem Soc Trans. 2022; Doi: 10.1042/BST20210506
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** Sevimli, G; Alston, AE; Funk, F; Flühmann, B; Malli, R; Graier, WF; Eroglu, E Probing Subcellular Iron Availability with Genetically Encoded Nitric Oxide Biosensors.
Biosensors (Basel). 2022; 12(10): Doi: 10.3390/bios12100903 [OPEN ACCESS]
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** Sevimli, G; Smith, MJ; Caglar, TA; Bilir, Ş; Secilmis, M; Altun, HY; Yigit, EN; Yang, F; Keeley, TP; Malli, R; Öztürk, G; Mann, GE; Eroglu, E Nitric oxide biosensor uncovers diminished ferrous iron-dependency of cultured cells adapted to physiological oxygen levels.
Redox Biol. 2022; 53: 102319 Doi: 10.1016/j.redox.2022.102319 [OPEN ACCESS]
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** Spyropoulos, F; Sorrentino, A; van, der, Reest, J; Yang, P; Waldeck-Weiermair, M; Steinhorn, B; Eroglu, E; Saeedi, Saravi, SS; Yu, P; Haigis, M; Christou, H; Michel, T Metabolomic and transcriptomic signatures of chemogenetic heart failure.
Am J Physiol Heart Circ Physiol. 2022; 322(3): H451-H465. Doi: 10.1152/ajpheart.00628.2021 [OPEN ACCESS]
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Review

** Steinhorn, B; Eroglu, E; Michel, T Chemogenetic Approaches to Probe Redox Pathways: Implications for Cardiovascular Pharmacology and Toxicology
ANNU REV PHARMACOL. 2022; 62: 551-571. Doi: 10.1146/annurev-pharmtox-012221-082339
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Editorial

** Eroglu, E; Graier, WF; Malli, R The preamble to the free radical biology and medicine virtual special issue on "Targeting genetic biosensors to intracellular signaling pathways".
Free Radic Biol Med. 2022; 187: 202-203. Doi: 10.1016/j.freeradbiomed.2022.05.026
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Correction

** Sevimli, G; Smith, MJ; Caglar, TA; Bilir, Ş; Secilmis, M; Altun, HY; Yigit, EN; Yang, F; Keeley, TP; Malli, R; Öztürk, G; Mann, GE; Eroglu, E Corrigendum to "Nitric oxide biosensor uncovers diminished ferrous iron-dependency of cultured cells adapted to physiological oxygen levels" [Redox Biol. 53 (2022) 102319].
REDOX BIOL. 2022; 54: 102364 Doi: 10.1016/j.redox.2022.102364 [OPEN ACCESS]
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2021

Full paper/article (Journal)

** Collins, JA; Kapustina, M; Bolduc, JA; Pike, JFW; Diekman, BO; Mix, K; Chubinskaya, S; Eroglu, E; Michel, T; Poole, LB; Furdui, CM; Loeser, RF Sirtuin 6 (SIRT6) regulates redox homeostasis and signaling events in human articular chondrocytes.
Free Radic Biol Med. 2021; 166:90-103 Doi: 10.1016/j.freeradbiomed.2021.01.054 [OPEN ACCESS]
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** Erdogan, YC; Altun, HY; Secilmis, M; Ata, BN; Sevimli, G; Cokluk, Z; Zaki, AG; Sezen, S; Caglar, TA; Sevgen, I; Steinhorn, B; Ai, HW; Ozturk, G; Belousov, VV; Michel, T; Eroglu, E Complexities of the chemogenetic toolkit: Differential mDAAO activation by D-amino substrates and subcellular targeting
FREE RADICAL BIO MED. 2021; 177: 132-142. Doi: 10.1016/j.freeradbiomed.2021.10.023 [OPEN ACCESS]
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** Secilmis, M; Altun, HY; Pilic, J; Erdogan, YC; Cokluk, Z; Ata, BN; Sevimli, G; Zaki, AG; Yigit, EN; Öztürk, G; Malli, R; Eroglu, E A Co-Culture-Based Multiparametric Imaging Technique to Dissect Local H2O2 Signals with Targeted HyPer7.
Biosensors (Basel). 2021; 11(9): 338 Doi: 10.3390/bios11090338 [OPEN ACCESS]
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2020

Full paper/article (Journal)

** Pak, VV; Ezeriņa, D; Lyublinskaya, OG; Pedre, B; Tyurin-Kuzmin, PA; Mishina, NM; Thauvin, M; Young, D; Wahni, K; Martínez Gache, SA; Demidovich, AD; Ermakova, YG; Maslova, YD; Shokhina, AG; Eroglu, E; Bilan, DS; Bogeski, I; Michel, T; Vriz, S; Messens, J; Belousov, VV Ultrasensitive Genetically Encoded Indicator for Hydrogen Peroxide Identifies Roles for the Oxidant in Cell Migration and Mitochondrial Function.
Cell Metab. 2020; 31(3):642-653 Doi: 10.1016/j.cmet.2020.02.003 [OPEN ACCESS]
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** Saeedi Saravi, SS; Eroglu, E; Waldeck-Weiermair, M; Sorrentino, A; Steinhorn, B; Belousov, V; Michel, T Differential endothelial signaling responses elicited by chemogenetic H2O2 synthesis.
Redox Biol. 2020; 36(4):101605-101605 Doi: 10.1016/j.redox.2020.101605 [OPEN ACCESS]
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Comment

** Eroglu, E; Michel, T; Graier, WF; Malli, R Yes (again) to local NO.
Nat Chem Biol. 2020; 16(6):606-607 Doi: 10.1038/s41589-020-0552-7
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2019

Full paper/article (Journal)

** Burgstaller, S; Bischof, H; Gensch, T; Stryeck, S; Gottschalk, B; Ramadani-Muja, J; Eroglu, E; Rost, R; Balfanz, S; Baumann, A; Waldeck-Weiermair, M; Hay, JC; Madl, T; Graier, WF; Malli, R pH-Lemon, a Fluorescent Protein-Based pH Reporter for Acidic Compartments.
ACS Sens. 2019; 4(4): 883-891. Doi: 10.1021/acssensors.8b01599 [Poster] [OPEN ACCESS]
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** Eroglu, E; Saravi, SSS; Sorrentino, A; Steinhorn, B; Michel, T Discordance between eNOS phosphorylation and activation revealed by multispectral imaging and chemogenetic methods.
Proc Natl Acad Sci U S A. 2019; 116(40):20210-20217 Doi: 10.1073/pnas.1910942116 [OPEN ACCESS]
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** Gottschalk, B; Klec, C; Leitinger, G; Bernhart, E; Rost, R; Bischof, H; Madreiter-Sokolowski, CT; Radulović, S; Eroglu, E; Sattler, W; Waldeck-Weiermair, M; Malli, R; Graier, WF MICU1 controls cristae junction and spatially anchors mitochondrial Ca2+ uniporter complex.
Nat Commun. 2019; 10(1):3732-3732 Doi: 10.1038/s41467-019-11692-x [OPEN ACCESS]
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** Waldeck-Weiermair, M; Gottschalk, B; Madreiter-Sokolowski, CT; Ramadani-Muja, J; Ziomek, G; Klec, C; Burgstaller, S; Bischof, H; Depaoli, MR; Eroglu, E; Malli, R; Graier, WF Development and Application of Sub-Mitochondrial Targeted Ca2 + Biosensors.
Front Cell Neurosci. 2019; 13: 449-449. Doi: 10.3389/fncel.2019.00449 [OPEN ACCESS]
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Review

** Depaoli, MR; Bischof, H; Eroglu, E; Burgstaller, S; Ramadani-Muja, J; Rauter, T; Schinagl, M; Waldeck-Weiermair, M; Hay, JC; Graier, WF; Malli, R Live cell imaging of signaling and metabolic activities.
Pharmacol Ther. 2019; 202:98-119 Doi: 10.1016/j.pharmthera.2019.06.003 [OPEN ACCESS]
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2018

Full paper/article (Journal)

** Deak, AT; Gottschalk, B; Eroglu, E; Rost, R; Waldeck-Weiermair, M; Graier, WF; Malli, R High-Resolution Imaging of STIM/Orai Subcellular Localization Using Array Confocal Laser Scanning Microscopy.
Methods Mol Biol. 2018; 1843(2):175-187 Doi: 10.1007/978-1-4939-8704-7_15
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** Depaoli, MR; Karsten, F; Madreiter-Sokolowski, CT; Klec, C; Gottschalk, B; Bischof, H; Eroglu, E; Waldeck-Weiermair, M; Simmen, T; Graier, WF; Malli, R Real-Time Imaging of Mitochondrial ATP Dynamics Reveals the Metabolic Setting of Single Cells.
Cell Rep. 2018; 25(2):501-512 Doi: 10.1016/j.celrep.2018.09.027 [OPEN ACCESS]
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** Eroglu, E; Bischof, H; Charoensin, S; Waldeck-Weiermaier, M; Graier, WF; Malli, R Real-Time Imaging of Nitric Oxide Signals in Individual Cells Using geNOps.
Methods Mol Biol. 2018; 1747: 23-34. Doi: 10.1007/978-1-4939-7695-9_3
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** Opelt, M; Wölkart, G; Eroglu, E; Waldeck-Weiermair, M; Malli, R; Graier, WF; Kollau, A; Fassett, JT; Schrammel, A; Mayer, B; Gorren, ACF Sustained Formation of Nitroglycerin-Derived Nitric Oxide by Aldehyde Dehydrogenase-2 in Vascular Smooth Muscle without Added Reductants: Implications for the Development of Nitrate Tolerance.
Mol Pharmacol. 2018; 93(4): 335-343. Doi: 10.1124/mol.117.110783 [OPEN ACCESS]
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Review

** Eroglu, E; Charoensin, S; Bischof, H; Ramadani, J; Gottschalk, B; Depaoli, MR; Waldeck-Weiermair, M; Graier, WF; Malli, R Genetic biosensors for imaging nitric oxide in single cells.
Free Radic Biol Med. 2018; 128:50-58 Doi: 10.1016/j.freeradbiomed.2018.01.027 [OPEN ACCESS]
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2017

Full paper/article (Journal)

** Bischof, H; Rehberg, M; Stryeck, S; Artinger, K; Eroglu, E; Waldeck-Weiermair, M; Gottschalk, B; Rost, R; Deak, AT; Niedrist, T; Vujic, N; Lindermuth, H; Prassl, R; Pelzmann, B; Groschner, K; Kratky, D; Eller, K; Rosenkranz, AR; Madl, T; Plesnila, N; Graier, WF; Malli, R Novel genetically encoded fluorescent probes enable real-time detection of potassium in vitro and in vivo.
Nat Commun. 2017; 8(1):1422-1422 Doi: 10.1038/s41467-017-01615-z [OPEN ACCESS]
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** Charoensin, S; Eroglu, E; Opelt, M; Bischof, H; Madreiter-Sokolowski, CT; Kirsch, A; Depaoli, MR; Frank, S; Schrammel, A; Mayer, B; Waldeck-Weiermair, M; Graier, WF; Malli, R Intact mitochondrial Ca2+ uniport is essential for agonist-induced activation of endothelial nitric oxide synthase (eNOS).
Free Radic Biol Med. 2017; 102(1):248-259 Doi: 10.1016/j.freeradbiomed.2016.11.049 [OPEN ACCESS]
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** Eroglu, E; Hallström, S; Bischof, H; Opelt, M; Schmidt, K; Mayer, B; Waldeck-Weiermair, M; Graier, WF; Malli, R Real-time visualization of distinct nitric oxide generation of nitric oxide synthase isoforms in single cells.
Nitric Oxide. 2017; 70(31):59-67 Doi: 10.1016/j.niox.2017.09.001 [OPEN ACCESS]
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** Eroglu, E; Rost, R; Bischof, H; Blass, S; Schreilechner, A; Gottschalk, B; Depaoli, MR; Klec, C; Charoensin, S; Madreiter-Sokolowski, CT; Ramadani, J; Waldeck-Weiermair, M; Graier, WF; Malli, R Application of Genetically Encoded Fluorescent Nitric Oxide (NO•) Probes, the geNOps, for Real-time Imaging of NO• Signals in Single Cells.
J Vis Exp. 2017; 5(121): Doi: 10.3791/55486 [OPEN ACCESS]
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2016

Full paper/article (Journal)

** Eroglu, E; Gottschalk, B; Charoensin, S; Blass, S; Bischof, H; Rost, R; Madreiter-Sokolowski, CT; Pelzmann, B; Bernhart, E; Sattler, W; Hallström, S; Malinski, T; Waldeck-Weiermair, M; Graier, WF; Malli, R Development of novel FP-based probes for live-cell imaging of nitric oxide dynamics.
Nat Commun. 2016; 7(3):10623-10623 Doi: 10.1038/ncomms10623 [OPEN ACCESS]
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** Madreiter-Sokolowski, CT; Gottschalk, B; Parichatikanond, W; Eroglu, E; Klec, C; Waldeck-Weiermair, M; Malli, R; Graier, WF Resveratrol Specifically Kills Cancer Cells by a Devastating Increase in the Ca2+ Coupling Between the Greatly Tethered Endoplasmic Reticulum and Mitochondria.
Cell Physiol Biochem. 2016; 39(4):1404-1420 Doi: 10.1159/000447844 [OPEN ACCESS]
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** Madreiter-Sokolowski, CT; Klec, C; Parichatikanond, W; Stryeck, S; Gottschalk, B; Pulido, S; Rost, R; Eroglu, E; Hofmann, NA; Bondarenko, AI; Madl, T; Waldeck-Weiermair, M; Malli, R; Graier, WF PRMT1-mediated methylation of MICU1 determines the UCP2/3 dependency of mitochondrial Ca(2+) uptake in immortalized cells.
Nat Commun. 2016; 7(4):12897-12897 Doi: 10.1038/ncomms12897 [OPEN ACCESS]
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** Malli, R; Eroglu, E; Waldeck-Weiermair, M; Graier, WF Filling a GAP-An Optimized Probe for ER Ca(2+) Imaging In Vivo.
Cell Chem Biol. 2016; 23(6):641-643 Doi: 10.1016/j.chembiol.2016.06.003 [OPEN ACCESS]
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** Opelt, M; Eroglu, E; Waldeck-Weiermair, M; Russwurm, M; Koesling, D; Malli, R; Graier, WF; Fassett, JT; Schrammel, A; Mayer, B Formation of Nitric Oxide by Aldehyde Dehydrogenase-2 Is Necessary and Sufficient for Vascular Bioactivation of Nitroglycerin.
J Biol Chem. 2016; 291(46):24076-24084 Doi: 10.1074/jbc.M116.752071 [OPEN ACCESS]
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Abstract (Journal)

** Eroglu, E; Waldeck-Weiermair, M; Graier, WF; Malli, R Development of novel fluorescent protein-based probes for live-cell imaging of nitric oxide dynamics
FREE RADICAL BIO MED. 2016; 96: S18-S18.-Conference of the Society-for-Free-Radical-Research-Europe (SFRR-E); JUN 08-11, 2016; Budapest, HUNGARY. Doi: 10.1016/j.freeradbiomed.2016.04.156 [Oral Communication]
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** Eroglu, E; Waldeck-Weiermair, M; Graier, WF; Malli, R; Development of Novel FP-Based Probes for Live-Cell Imaging of Nitric Oxide Dynamics.
J VASC RES. 2016; 53: 22-22.-12th International Symposium on Mechanisms of Vasodilatation; NOV 06-09, 2016; Rochester, NY. [Oral Communication]
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** Malli, R; Eroglu, E; Waldeck-Weiermair, M; Graier, WF Ca2+-triggered nitric oxide production in endothelial cells is under the control of mitochondrial Ca2+ uptake
FREE RADICAL BIO MED. 2016; 96: S25-S25.-Conference of the Society-for-Free-Radical-Research-Europe (SFRR-E); JUN 08-11, 2016; Budapest, HUNGARY. Doi: 10.1016/j.freeradbiomed.2016.04.175 [Oral Communication]
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** Malli, R; Eroglu, E; Waldeck-Weiermair, M; Graier, WF Ca2+-Triggered Nitric Oxide Production in Endothelial Cells is Under the Control of Mitochondrial Ca2+Uptake
J VASC RES. 2016; 53: 24-24.-12th International Symposium on Mechanisms of Vasodilatation; NOV 06-09, 2016; Rochester, NY. [Poster]
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2015

Full paper/article (Journal)

** Waldeck-Weiermair, M; Bischof, H; Blass, S; Deak, AT; Klec, C; Graier, T; Roller, C; Rost, R; Eroglu, E; Gottschalk, B; Hofmann, NA; Graier, WF; Malli, R Generation of Red-Shifted Cameleons for Imaging Ca²⁺ Dynamics of the Endoplasmic Reticulum.
Sensors (Basel). 2015; 15(6):13052-13068 Doi: 10.3390/s150613052 [OPEN ACCESS]
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