Division of Medical Physics and Biophysics

SCI/PUBMED listed | all typs of publications | all by year and first author | MUG authors |

** = Publications listed in SCI/SSCI/Pubmed

Full paper/article (Journal)

** Ahammer, H; Reiss, MA; Hackhofer, M; Andronache, I; Radulovic, M; Labra-Spröhnle, F; Jelinek, HF ComsystanJ: A collection of Fiji/ImageJ2 plugins for nonlinear and complexity analysis in 1D, 2D and 3D
PLOS ONE. 2023; 18(10): e0292217 Doi: 10.1371/journal.pone.0292217 [OPEN ACCESS]
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** Bellini, C; Vergara, E; Bencs, F; Fodor, K; Bosze, S; Krivic, D; Bacsa, B; Surguta, SE; Tovari, J; Reljic, R; Horvaati, K Design and Characterization of a Multistage Peptide-Based Vaccine Platform to Target Mycobacterium tuberculosis Infection
BIOCONJUGATE CHEM. 2023; Doi: 10.1021/acs.bioconjchem.3c00273 [OPEN ACCESS]
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** Bernauer, L; Berzak, P; Lehmayer, L; Messenlehner, J; Oberdorfer, G; Zellnig, G; Wolinski, H; Augustin, C; Baeck, M; Emmerstorfer-Augustin, A Sterol interactions influence the function of Wsc sensors.
J Lipid Res. 2023; 64(12):100466 Doi: 10.1016/j.jlr.2023.100466 [OPEN ACCESS]
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** Bhagirath, P; Campos, FO; Postema, P; Kemme, MJB; Wilde, AAM; Prassl, AJ; Neic, A; Rinaldi, CA; Götte, MJW; Plank, G; Bishop, MJ Arrhythmogenic vulnerability of re-entrant pathways in post-infarct ventricular tachycardia assessed by advanced computational modelling.
Europace. 2023; 25(9): Doi: 10.1093/europace/euad198 [OPEN ACCESS]
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** Busatto, A; Rupp, LC; Gillette, K; Narayan, A; Plank, G; MacLeod, RS Capturing the Influence of Conduction Velocity on Epicardial Activation Patterns Using Uncertainty Quantification.
Comput Cardiol (2010). 2023; 50: Doi: 10.22489/cinc.2023.345 [Oral Communication] [OPEN ACCESS]
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** Campos, FO; Shiferaw, Y; Whitaker, J; Plank, G; Bishop, MJ Subthreshold delayed afterdepolarizations provide an important arrhythmogenic substrate in the border zone of infarcted hearts.
Heart Rhythm. 2023; 20(2):299-306 Doi: 10.1016/j.hrthm.2022.10.026
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** Cisse, A; Desfosses, A; Stainer, S; Kandiah, E; Traore, DAK; Bezault, A; Schachner-Nedherer, AL; Leitinger, G; Hoerl, G; Hinterdorfer, P; Gutsche, I; Prassl, R; Peters, J; Kornmueller, K Targeting structural flexibility in low density lipoprotein by integrating cryo-electron microscopy and high-speed atomic force microscopy.
Int J Biol Macromol. 2023; 252: 126345 Doi: 10.1016/j.ijbiomac.2023.126345
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** Forstner, D; Guettler, J; Brugger, BA; Lyssy, F; Neuper, L; Daxboeck, C; Cvirn, G; Fuchs, J; Kraeker, K; Frolova, A; Valdes, DS; Stern, C; Hirschmugl, B; Fluhr, H; Wadsack, C; Huppertz, B; Nonn, O; Herse, F; Gauster, M CD39 abrogates platelet-derived factors induced IL-1β expression in the human placenta.
Front Cell Dev Biol. 2023; 11: 1183793 Doi: 10.3389/fcell.2023.1183793 [OPEN ACCESS]
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** Gillette, K; Gsell, MAF; Nagel, C; Bender, J; Winkler, B; Williams, SE; Bär, M; Schäffter, T; Dössel, O; Plank, G; Loewe, A MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations.
Sci Data. 2023; 10(1): 531 Doi: 10.1038/s41597-023-02416-4 [OPEN ACCESS]
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** Kamali, R; Gillete, K; Tate, J; Abhyankar, DA; Dosdall, DJ; Plank, G; Bunch, TJ; Macleod, RS; Ranjan, R Treatment Planning for Atrial Fibrillation Using Patient-Specific Models Showing the Importance of Fibrillatory-Areas.
Ann Biomed Eng. 2023; 51(2):329-342 Doi: 10.1007/s10439-022-03029-5 [OPEN ACCESS]
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** Kendzia, S; Franke, S; Kröhler, T; Golob-Schwarzl, N; Schweiger, C; Toeglhofer, AM; Skofler, C; Uranitsch, S; El-Heliebi, A; Fuchs, J; Punschart, A; Stiegler, P; Keil, M; Hoffmann, J; Henderson, D; Lehrach, H; Yaspo, ML; Reinhard, C; Schäfer, R; Keilholz, U; Regenbrecht, C; Schicho, R; Fickert, P; Lax, SF; Erdmann, F; Schulz, MH; Kiemer, AK; Haybaeck, J; Kessler, SM A combined computational and functional approach identifies IGF2BP2 as a driver of chemoresistance in a wide array of pre-clinical models of colorectal cancer.
Mol Cancer. 2023; 22(1):89 Doi: 10.1186/s12943-023-01787-x [OPEN ACCESS]
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** Maltan, L; Weiß, S; Najjar, H; Leopold, M; Lindinger, S; Höglinger, C; Höbarth, L; Sallinger, M; Grabmayr, H; Berlansky, S; Krivic, D; Hopl, V; Blaimschein, A; Fahrner, M; Frischauf, I; Tiffner, A; Derler, I Photocrosslinking-induced CRAC channel-like Orai1 activation independent of STIM1.
Nat Commun. 2023; 14(1): 1286 Doi: 10.1038/s41467-023-36458-4 [OPEN ACCESS]
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** Motycka, B; Csarman, F; Rupp, M; Schnabel, K; Nagy, G; Karnpakdee, K; Scheiblbrandner, S; Tscheliessnig, R; Oostenbrink, C; Hammel, M; Ludwig, R Amino Acid Residues Controlling Domain Interaction and Interdomain Electron Transfer in Cellobiose Dehydrogenase
CHEMBIOCHEM. 2023; Doi: 10.1002/cbic.202300431 [OPEN ACCESS]
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** Motycka, B; Csarman, F; Tscheliessnig, R; Hammel, M; Ludwig, R Resolving domain positions of cellobiose dehydrogenase by small angle X-ray scattering
FEBS J. 2023; Doi: 10.1111/febs.16885 [OPEN ACCESS]
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** Nagel, C; Espinosa, CB; Gillette, K; Gsell, MAF; Sanchez, J; Plank, G; Dossel, O; Loewe, A Comparison of Propagation Models and Forward Calculation Methods on Cellular, Tissue and Organ Scale Atrial Electrophysiology.
IEEE Trans Biomed Eng. 2023; 70(2):511-522 Doi: 10.1109/TBME.2022.3196144
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** Nonn, O; Bonstingl, L; Sallinger, K; Neuper, L; Fuchs, J; Gauster, M; Huppertz, B; Brislinger, D; El-Heliebi, A; Fluhr, H; Kampelmühler, E; Klaritsch, P Maternal COVID-19 causing intrauterine foetal demise with microthrombotic placental insufficiency: a case report.
BMC Pregnancy Childbirth. 2023; 23(1): 653 Doi: 10.1186/s12884-023-05942-6 (- Case Report) [OPEN ACCESS]
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** Okutan, B; Schwarze, UY; Berger, L; Martinez, DC; Herber, V; Suljevic, O; Plocinski, T; Swieszkowski, W; Santos, SG; Schindl, R; Löffler, JF; Weinberg, AM; Sommer, NG The combined effect of zinc and calcium on the biodegradation of ultrahigh-purity magnesium implants.
Biomater Adv. 2023; 146:213287 Doi: 10.1016/j.bioadv.2023.213287
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** Peptenatu, D; Andronache, I; Ahammer, H; Radulovic, M; Costanza, JK; Jelinek, HF; Di Ieva, A; Koyama, K; Grecu, A; Gruia, AK; Simion, AG; Nedelcu, ID; Olteanu, C; Draghici, CC; Marin, M; Diaconu, DC; Fensholt, R; Newman, EA A new fractal index to classify forest fragmentation and disorder
LANDSCAPE ECOL. 2023; Doi: 10.1007/s10980-023-01640-y
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** Peptenatu, D; Nedelcu, ID; Pop, CS; Simion, AG; Furtunescu, F; Burcea, M; Andronache, I; Radulovic, M; Jelinek, HF; Ahammer, H; Gruia, AK; Grecu, A; Popa, MC; Militaru, V; Draghici, CC; Pintilii, RD The Spatial-Temporal Dimension of Oncological Prevalence and Mortality in Romania
GEOHEALTH. 2023; 7(10): e2023GH000901 Doi: 10.1029/2023GH000901 [OPEN ACCESS]
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** Petras, A; Gsell, MAF; Augustin, CM; Rodriguez-Padilla, J; Jung, A; Strocchi, M; Prinzen, FW; Niederer, SA; Plank, G; Vigmond, EJ Mechanoelectric effects in healthy cardiac function and under Left Bundle Branch Block pathology.
Comput Biol Med. 2023; 156:106696 Doi: 10.1016/j.compbiomed.2023.106696 [OPEN ACCESS]
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** Rached, G; Saliba, Y; Maddah, D; Hajal, J; Smayra, V; Bakhos, JJ; Groschner, K; Birnbaumer, L; Fares, N TRPC3 Regulates Islet Beta-Cell Insulin Secretion
ADV SCI. 2023; Doi: 10.1002/advs.202204846 [OPEN ACCESS]
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** Rodero, C; Longobardi, S; Augustin, C; Strocchi, M; Plank, G; Lamata, P; Niederer, SA Calibration of Cohorts of Virtual Patient Heart Models Using Bayesian History Matching.
Ann Biomed Eng. 2023; 51(1):241-252 Doi: 10.1007/s10439-022-03095-9 [OPEN ACCESS]
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** Roney, CH; Solis, Lemus, JA; Lopez, Barrera, C; Zolotarev, A; Ulgen, O; Kerfoot, E; Bevis, L; Misghina, S; Vidal, Horrach, C; Jaffery, OA; Ehnesh, M; Rodero, C; Dharmaprani, D; Ríos-Muñoz, GR; Ganesan, A; Good, WW; Neic, A; Plank, G; Hopman, LHGA; Götte, MJW; Honarbakhsh, S; Narayan, SM; Vigmond, E; Niederer, S Constructing bilayer and volumetric atrial models at scale.
Interface Focus. 2023; 13(6): 20230038 Doi: 10.1098/rsfs.2023.0038 [OPEN ACCESS]
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** Savva, A; Hama, A; Herrera-Lopez, G; Schmidt, T; Migliaccio, L; Steiner, N; Kawan, M; Fiumelli, H; Magistretti, PJ; Mcculloch, I; Baran, D; Gasparini, N; Schindl, R; Glowacki, ED; Inal, S Photo-Chemical Stimulation of Neurons with Organic Semiconductors
ADV SCI. 2023; Doi: 10.1002/advs.202300473 [OPEN ACCESS]
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** Schachner-Nedherer, AL; Fuchs, J; Vidakovic, I; Höller, O; Schratter, G; Almer, G; Fröhlich, E; Zimmer, A; Wabitsch, M; Kornmueller, K; Prassl, R Lipid Nanoparticles as a Shuttle for Anti-Adipogenic miRNAs to Human Adipocytes.
Pharmaceutics. 2023; 15(7): Doi: 10.3390/pharmaceutics15071983 [OPEN ACCESS]
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** Shrestha, N; Zorn-Pauly, K; Mesirca, P; Koyani, CN; Wölkart, G; Di, Biase, V; Torre, E; Lang, P; Gorischek, A; Schreibmayer, W; Arnold, R; Maechler, H; Mayer, B; von, Lewinski, D; Torrente, AG; Mangoni, ME; Pelzmann, B; Scheruebel, S Lipopolysaccharide-induced sepsis impairs M2R-GIRK signaling in the mouse sinoatrial node.
Proc Natl Acad Sci U S A. 2023; 120(28): e2210152120 Doi: 10.1073/pnas.2210152120 [OPEN ACCESS]
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** Simic, M; Hill, C; Hohenester, U Theoretical Description of Optofluidic Force Induction
PHYS REV APPL. 2023; 19(3): 034041 Doi: 10.1103/PhysRevApplied.19.034041
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** Simic, M; Neuper, C; Hohenester, U; Hill, C Optofluidic force induction as a process analytical technology
ANAL BIOANAL CHEM. 2023; Doi: 10.1007/s00216-023-04796-3 [OPEN ACCESS]
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** Strocchi, M; Gillette, K; Neic, A; Elliott, MK; Wijesuriya, N; Mehta, V; Vigmond, EJ; Plank, G; Rinaldi, CA; Niederer, SA Effect of scar and His-Purkinje and myocardium conduction on response to conduction system pacing.
J Cardiovasc Electrophysiol. 2023; 34(4):984-993 Doi: 10.1111/jce.15847 [OPEN ACCESS]
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** Turrina, C; Klassen, A; Milani, D; Rojas-González, DM; Ledinski, G; Auer, D; Sartori, B; Cvirn, G; Mela, P; Berensmeier, S; Schwaminger, SP Superparamagnetic iron oxide nanoparticles for their application in the human body: Influence of the surface.
Heliyon. 2023; 9(6): e16487 Doi: 10.1016/j.heliyon.2023.e16487 [OPEN ACCESS]
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Review

** Baron, J; Groschner, K; Tiapko, O Calcium transport and sensing in TRPC channels - New insights into a complex feedback regulation
CELL CALCIUM. 2023; 116: 102816 Doi: 10.1016/j.ceca.2023.102816
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** Sallinger, M; Grabmayr, H; Humer, C; Bonhenry, D; Romanin, C; Schindl, R; Derler, I Activation mechanisms and structural dynamics of STIM proteins
J PHYSIOL-LONDON. 2023; Doi: 10.1113/JP283828
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** Ziesel, D; Nowakowska, M; Scheruebel, S; Kornmueller, K; Schäfer, U; Schindl, R; Baumgartner, C; Üçal, M; Rienmüller, T Electrical stimulation methods and protocols for the treatment of traumatic brain injury: a critical review of preclinical research.
J Neuroeng Rehabil. 2023; 20(1): 51 Doi: 10.1186/s12984-023-01159-y [OPEN ACCESS]
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Editorial

** Cluitmans, M; Walton, R; Plank, G Editorial: Computational methods in cardiac electrophysiology.
FRONT PHYSIOL. 2023; 14: 1231342 Doi: 10.3389/fphys.2023.1231342 [OPEN ACCESS]
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** Groschner, K Arriving at the next level of complexity in IP₃R and SOCE signaling
CELL CALCIUM. 2023; 115: 102796 Doi: 10.1016/j.ceca.2023.102796
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Correction

** Golob-Schwarzl, N; Schweiger, C; Koller, C; Krassnig, S; Gogg-Kamerer, M; Gantenbein, N; Toeglhofer, AM; Wodlej, C; Bergler, H; Pertschy, B; Uranitsch, S; Holter, M; El-Heliebi, A; Fuchs, J; Punschart, A; Stiegler, P; Keil, M; Hoffmann, J; Henderson, D; Lehrach, H; Reinhard, C; Regenbrecht, C; Schicho, R; Fickert, P; Lax, S; Haybaeck, J Correction: Separation of low and high grade colon and rectum carcinoma by eukaryotic translation initiation factors 1, 5 and 6.
Oncotarget. 2023; 14: 83-84. Doi: 10.18632/oncotarget.28115 [OPEN ACCESS]
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** Peptenatu, D; Andronache, I; Ahammer, H; Radulovic, M; Costanza, JK; Jelinek, HF; Di Ieva, A; Koyama, K; Grecu, A; Gruia, AK; Simion, AG; Nedelcu, ID; Olteanu, C; Draghici, CC; Marin, M; Diaconu, DC; Fensholt, R; Newman, EA A new fractal index to classify forest fragmentation and disorder (vol 38, pg 1373, 2023)
LANDSCAPE ECOL. 2023; 38(12): 3285-3286. Doi: 10.1007/s10980-023-01781-0
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Abstract (Journal)

** Clarke, A; Groschner, K; Stockner, T DAG activates TRPC3 through direct interaction with pore-lining residues
EUR BIOPHYS J BIOPHY. 2023; 52(SUPPL 1): S123-S123. [Poster]
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** Groschner, K; Erkan-Candag, H; Curcic, S Dynamic communication between TRPC3 and IP3R shape Ca2+ signaling signatures
BIOPHYS J. 2023; 122(3): 235A-236A. [Poster]
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** Kornmueller, K; Stainer, S; Cisse, A; Desfosses, A; Kandiah, E; Leitinger, G; Hoerl, G; Hinterdorfer, P; Peters, J; Prassl, R Structure and dynamics of low density lipoprotein targeted by cryo-EM and HS-AFM
EUR BIOPHYS J BIOPHY. Abstracts. 2023; 52(SUPPL 1):S88-S88.-14th EBSA congress; JUL 31 - AUG 4, 2023; Stockholm, SWEDEN. [Oral Communication]
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** Krivic, D; Bacsa, B; Maitz, KS; Graziani, A; Kargl, J; Groschner, K Photopharmacological dissociation of transcriptional activation and degranulation of mast cells
BIOPHYS J. 2023; 122(3): 256A-256A. [Poster]
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** Manninger, M; Lercher, I; Hermans, A; Prassl, A; Zirlik, A; Vernooy, K; Plank, G; Scherr, D; Pock, T; Linz, D Machine-learning guided differentiation between photoplethysmography waveforms of supraventricular and ventricular origin
WIEN KLIN WOCHENSCHR. Abstracts. 2023; 135(S2):S415-S415.-ÖKG Jahrestagung; MAY 31-JUN 3, 2023; Salzburg, AUSTRIA. [Poster]
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** Mercnik, MH; Telebar, F; Schaffer, S; Fluhr, H; Sanchez-Duffhues, G; Goumans, MJE; Wadsack, C ACTIVIN RECEPTOR-LIKE-KINASE-2 (ALK2)-SNAIL PATHWAY DRIVES ENDOTHELIAL TO MESENCHYMAL TRANSITION (ENDOMT) IN FETOPLACENTAL ENDOTHELIAL CELLS (FPEC) OF EARLY ONSET PREECLAMPSIA (EO-PE)
PLACENTA. 2023; 140: E77-E77.-Annual Meeting of the International-Federation-of-Placenta-Associations (IFPA); SEP 05-08, 2023; Rotorua, NEW ZEALAND. [Poster]
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** Sobota, V; Augustin, CM; Nordmeyer, S; Vigmond, EJ; Bayer, JD Regional differences in extracellular volume increase arrhythmia vulnerability in aortic stenosis patients with and without diffuse fibrosis: a computational study
EUR HEART J. 2023; 44: -Annual Meeting of the European-Society-of-Cardiology (ESC); AUG 25-28, 2023; Amsterdam, NETHERLANDS. [Oral Communication]
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Full paper/article (Proceedings)

** Rupp, LC; Busatto, A; Bergquist, JA; Gillette, K; Narayan, A; Plank, G; MacLeod, RS Uncertainty Quantification of Fiber Orientation and Epicardial Activation.
Comput Cardiol (2010). 2023; 50: Doi: 10.22489/cinc.2023.137 [OPEN ACCESS]
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Comment

** Whitaker, J; Baum, TE; Qian, P; Prassl, AJ; Plank, G; Blankstein, R; Cochet, H; Sauer, WH; Bishop, MJ; Tedrow, U Frequency Domain Analysis of Endocardial Electrograms for Detection of Nontransmural Myocardial Fibrosis in Nonischemic Cardiomyopathy.
JACC Clin Electrophysiol. 2023; 9(7 Pt 1):923-935 Doi: 10.1016/j.jacep.2022.11.019
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Pre-print

** Grandits, T; Augustin, CM; Haase, G; Jost, N; Mirams, GR; Niederer, SA; Plank, G; Varró, A; Virág, L; Jung, A Neural network emulation of the human ventricular cardiomyocyte action potential: a tool for more efficient computation in pharmacological studies.
bioRxiv. 2023; Doi: 10.1101/2023.08.16.553497 [OPEN ACCESS]
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